LAMMPS (16 Mar 2018) OMP_NUM_THREADS environment is not set. Defaulting to 1 thread. (../comm.cpp:90) using 1 OpenMP thread(s) per MPI task # bulk Si via Tersoff units metal atom_style atomic lattice diamond 5.431 Lattice spacing in x,y,z = 5.431 5.431 5.431 region box block 0 20 0 20 0 10 create_box 1 box Created orthogonal box = (0 0 0) to (108.62 108.62 54.31) 1 by 1 by 1 MPI processor grid create_atoms 1 box Created 32000 atoms Time spent = 0.0019412 secs pair_style tersoff pair_coeff * * Si.tersoff Si mass 1 28.06 velocity all create 1000.0 376847 loop geom neighbor 1.0 bin neigh_modify delay 5 every 1 fix 1 all nve timestep 0.001 run 100 Neighbor list info ... update every 1 steps, delay 5 steps, check yes max neighbors/atom: 2000, page size: 100000 master list distance cutoff = 4.2 ghost atom cutoff = 4.2 binsize = 2.1, bins = 52 52 26 1 neighbor lists, perpetual/occasional/extra = 1 0 0 (1) pair tersoff, perpetual attributes: full, newton on pair build: full/bin/atomonly stencil: full/bin/3d bin: standard Per MPI rank memory allocation (min/avg/max) = 11.1 | 11.1 | 11.1 Mbytes Step Temp E_pair E_mol TotEng Press 0 1000 -148173.19 0 -144036.99 7019.4434 100 430.57813 -145815.61 0 -144034.65 -14550.734 Loop time of 8.53088 on 1 procs for 100 steps with 32000 atoms Performance: 1.013 ns/day, 23.697 hours/ns, 11.722 timesteps/s 99.8% CPU use with 1 MPI tasks x 1 OpenMP threads MPI task timing breakdown: Section | min time | avg time | max time |%varavg| %total --------------------------------------------------------------- Pair | 8.4236 | 8.4236 | 8.4236 | 0.0 | 98.74 Neigh | 0.065852 | 0.065852 | 0.065852 | 0.0 | 0.77 Comm | 0.0078607 | 0.0078607 | 0.0078607 | 0.0 | 0.09 Output | 0.00010872 | 0.00010872 | 0.00010872 | 0.0 | 0.00 Modify | 0.023968 | 0.023968 | 0.023968 | 0.0 | 0.28 Other | | 0.009521 | | | 0.11 Nlocal: 32000 ave 32000 max 32000 min Histogram: 1 0 0 0 0 0 0 0 0 0 Nghost: 11537 ave 11537 max 11537 min Histogram: 1 0 0 0 0 0 0 0 0 0 Neighs: 0 ave 0 max 0 min Histogram: 1 0 0 0 0 0 0 0 0 0 FullNghs: 530500 ave 530500 max 530500 min Histogram: 1 0 0 0 0 0 0 0 0 0 Total # of neighbors = 530500 Ave neighs/atom = 16.5781 Neighbor list builds = 2 Dangerous builds = 0 Total wall time: 0:00:08