LAMMPS (6 Oct 2016) # 3d Lennard-Jones melt variable x index 1 variable y index 1 variable z index 1 variable xx equal 20*$x variable xx equal 20*2 variable yy equal 20*$y variable yy equal 20*2 variable zz equal 20*$z variable zz equal 20*1 units lj atom_style atomic lattice fcc 0.8442 Lattice spacing in x,y,z = 1.6796 1.6796 1.6796 region box block 0 ${xx} 0 ${yy} 0 ${zz} region box block 0 40 0 ${yy} 0 ${zz} region box block 0 40 0 40 0 ${zz} region box block 0 40 0 40 0 20 create_box 1 box Created orthogonal box = (0 0 0) to (67.1838 67.1838 33.5919) 2 by 2 by 1 MPI processor grid create_atoms 1 box Created 128000 atoms mass 1 1.0 velocity all create 1.44 87287 loop geom pair_style lj/cut 2.5 pair_coeff 1 1 1.0 1.0 2.5 neighbor 0.3 bin neigh_modify delay 0 every 20 check no fix 1 all nve run 100 Neighbor list info ... 1 neighbor list requests update every 20 steps, delay 0 steps, check no max neighbors/atom: 2000, page size: 100000 master list distance cutoff = 2.8 ghost atom cutoff = 2.8 binsize = 1.4 -> bins = 48 48 24 Memory usage per processor = 8.13678 Mbytes Step Temp E_pair E_mol TotEng Press 0 1.44 -6.7733681 0 -4.6133849 -5.0196788 100 0.75841891 -5.759957 0 -4.6223375 0.20008866 Loop time of 2.55762 on 4 procs for 100 steps with 128000 atoms Performance: 16890.677 tau/day, 39.099 timesteps/s 99.8% CPU use with 4 MPI tasks x no OpenMP threads MPI task timing breakdown: Section | min time | avg time | max time |%varavg| %total --------------------------------------------------------------- Pair | 2.0583 | 2.0988 | 2.1594 | 2.6 | 82.06 Neigh | 0.24411 | 0.24838 | 0.25585 | 0.9 | 9.71 Comm | 0.066397 | 0.13872 | 0.1863 | 11.9 | 5.42 Output | 0.00012994 | 0.00021023 | 0.00025702 | 0.3 | 0.01 Modify | 0.055533 | 0.058343 | 0.061791 | 1.2 | 2.28 Other | | 0.0132 | | | 0.52 Nlocal: 32000 ave 32060 max 31939 min Histogram: 1 0 1 0 0 0 0 1 0 1 Nghost: 19630.8 ave 19681 max 19562 min Histogram: 1 0 0 0 1 0 0 0 1 1 Neighs: 1.20195e+06 ave 1.20354e+06 max 1.19931e+06 min Histogram: 1 0 0 0 0 0 0 2 0 1 Total # of neighbors = 4807797 Ave neighs/atom = 37.5609 Neighbor list builds = 5 Dangerous builds not checked Total wall time: 0:00:02