LAMMPS (22 Aug 2018) # 3d Lennard-Jones melt - client script variable mode index file if "${mode} == file" then "message client md file tmp.couple" elif "${mode} == zmq" "message client md zmq localhost:5555" elif "${mode} == mpione" "message client md mpi/one" elif "${mode} == mpitwo" "message client md mpi/two tmp.couple" message client md mpi/one variable x index 5 variable y index 5 variable z index 5 units lj atom_style atomic atom_modify sort 0 0.0 map yes lattice fcc 0.8442 Lattice spacing in x,y,z = 1.6796 1.6796 1.6796 region box block 0 $x 0 $y 0 $z region box block 0 5 0 $y 0 $z region box block 0 5 0 5 0 $z region box block 0 5 0 5 0 5 create_box 1 box Created orthogonal box = (0 0 0) to (8.39798 8.39798 8.39798) 1 by 1 by 2 MPI processor grid create_atoms 1 box Created 500 atoms Time spent = 0.000475883 secs mass 1 1.0 velocity all create 1.44 87287 loop geom neighbor 0.3 bin neigh_modify delay 0 every 1 check yes fix 1 all nve # same with NPT #fix 1 all npt temp 1.0 1.0 0.1 iso 1 1 1.0 fix 2 all client/md fix_modify 2 energy yes thermo 10 run 50 Per MPI rank memory allocation (min/avg/max) = 2.302 | 2.302 | 2.302 Mbytes Step Temp E_pair E_mol TotEng Press 0 1.44 0 0 -4.6176881 -5.0221006 10 1.1347688 0 0 -4.6166043 -2.6072847 20 0.628166 0 0 -4.62213 1.0186262 30 0.73767593 0 0 -4.6254647 0.49629637 40 0.69517962 0 0 -4.6253506 0.69303877 50 0.70150496 0 0 -4.6259832 0.59551518 Loop time of 0.0208495 on 2 procs for 50 steps with 500 atoms Performance: 1035997.740 tau/day, 2398.143 timesteps/s 99.1% CPU use with 2 MPI tasks x no OpenMP threads MPI task timing breakdown: Section | min time | avg time | max time |%varavg| %total --------------------------------------------------------------- Pair | 0 | 0 | 0 | 0.0 | 0.00 Neigh | 3.0994e-06 | 4.53e-06 | 5.9605e-06 | 0.0 | 0.02 Comm | 0.00012422 | 0.00012457 | 0.00012493 | 0.0 | 0.60 Output | 5.7697e-05 | 7.987e-05 | 0.00010204 | 0.0 | 0.38 Modify | 0.020463 | 0.020464 | 0.020466 | 0.0 | 98.15 Other | | 0.0001761 | | | 0.84 Nlocal: 250 ave 255 max 245 min Histogram: 1 0 0 0 0 0 0 0 0 1 Nghost: 0 ave 0 max 0 min Histogram: 2 0 0 0 0 0 0 0 0 0 Neighs: 0 ave 0 max 0 min Histogram: 2 0 0 0 0 0 0 0 0 0 Total # of neighbors = 0 Ave neighs/atom = 0 Neighbor list builds = 4 Dangerous builds = 0 Total wall time: 0:00:00