/* ---------------------------------------------------------------------- LAMMPS - Large-scale Atomic/Molecular Massively Parallel Simulator https://www.lammps.org/, Sandia National Laboratories LAMMPS development team: developers@lammps.org Copyright (2003) Sandia Corporation. Under the terms of Contract DE-AC04-94AL85000 with Sandia Corporation, the U.S. Government retains certain rights in this software. This software is distributed under the GNU General Public License. See the README file in the top-level LAMMPS directory. ------------------------------------------------------------------------- */ #include "compute_torque_chunk.h" #include "atom.h" #include "compute_chunk_atom.h" #include "domain.h" #include "error.h" #include "memory.h" using namespace LAMMPS_NS; /* ---------------------------------------------------------------------- */ ComputeTorqueChunk::ComputeTorqueChunk(LAMMPS *lmp, int narg, char **arg) : ComputeChunk(lmp, narg, arg), massproc(nullptr), masstotal(nullptr), com(nullptr), comall(nullptr), torque(nullptr), torqueall(nullptr) { if (narg != 4) error->all(FLERR, "Illegal compute torque/chunk command"); array_flag = 1; size_array_cols = 3; size_array_rows = 0; size_array_rows_variable = 1; extarray = 0; ComputeTorqueChunk::init(); ComputeTorqueChunk::allocate(); } /* ---------------------------------------------------------------------- */ ComputeTorqueChunk::~ComputeTorqueChunk() { memory->destroy(massproc); memory->destroy(masstotal); memory->destroy(com); memory->destroy(comall); memory->destroy(torque); memory->destroy(torqueall); } /* ---------------------------------------------------------------------- */ void ComputeTorqueChunk::compute_array() { int i, index; double dx, dy, dz, massone; double unwrap[3]; ComputeChunk::compute_array(); int *ichunk = cchunk->ichunk; // zero local per-chunk values for (i = 0; i < nchunk; i++) { massproc[i] = 0.0; com[i][0] = com[i][1] = com[i][2] = 0.0; torque[i][0] = torque[i][1] = torque[i][2] = 0.0; } // compute COM for each chunk double **x = atom->x; int *mask = atom->mask; int *type = atom->type; imageint *image = atom->image; double *mass = atom->mass; double *rmass = atom->rmass; int nlocal = atom->nlocal; for (i = 0; i < nlocal; i++) if (mask[i] & groupbit) { index = ichunk[i] - 1; if (index < 0) continue; if (rmass) massone = rmass[i]; else massone = mass[type[i]]; domain->unmap(x[i], image[i], unwrap); massproc[index] += massone; com[index][0] += unwrap[0] * massone; com[index][1] += unwrap[1] * massone; com[index][2] += unwrap[2] * massone; } MPI_Allreduce(massproc, masstotal, nchunk, MPI_DOUBLE, MPI_SUM, world); MPI_Allreduce(&com[0][0], &comall[0][0], 3 * nchunk, MPI_DOUBLE, MPI_SUM, world); for (i = 0; i < nchunk; i++) { if (masstotal[i] > 0.0) { comall[i][0] /= masstotal[i]; comall[i][1] /= masstotal[i]; comall[i][2] /= masstotal[i]; } } // compute torque on each chunk double **f = atom->f; for (i = 0; i < nlocal; i++) if (mask[i] & groupbit) { index = ichunk[i] - 1; if (index < 0) continue; domain->unmap(x[i], image[i], unwrap); dx = unwrap[0] - comall[index][0]; dy = unwrap[1] - comall[index][1]; dz = unwrap[2] - comall[index][2]; torque[index][0] += dy * f[i][2] - dz * f[i][1]; torque[index][1] += dz * f[i][0] - dx * f[i][2]; torque[index][2] += dx * f[i][1] - dy * f[i][0]; } MPI_Allreduce(&torque[0][0], &torqueall[0][0], 3 * nchunk, MPI_DOUBLE, MPI_SUM, world); } /* ---------------------------------------------------------------------- free and reallocate per-chunk arrays ------------------------------------------------------------------------- */ void ComputeTorqueChunk::allocate() { ComputeChunk::allocate(); memory->destroy(massproc); memory->destroy(masstotal); memory->destroy(com); memory->destroy(comall); memory->destroy(torque); memory->destroy(torqueall); maxchunk = nchunk; memory->create(massproc, maxchunk, "torque/chunk:massproc"); memory->create(masstotal, maxchunk, "torque/chunk:masstotal"); memory->create(com, maxchunk, 3, "torque/chunk:com"); memory->create(comall, maxchunk, 3, "torque/chunk:comall"); memory->create(torque, maxchunk, 3, "torque/chunk:torque"); memory->create(torqueall, maxchunk, 3, "torque/chunk:torqueall"); array = torqueall; } /* ---------------------------------------------------------------------- memory usage of local data ------------------------------------------------------------------------- */ double ComputeTorqueChunk::memory_usage() { double bytes = (double) maxchunk * 2 * sizeof(double) + ComputeChunk::memory_usage(); bytes += (double) maxchunk * 2 * 3 * sizeof(double); bytes += (double) maxchunk * 2 * 3 * sizeof(double); return bytes; }