LAMMPS (30 Aug 2013) units real atom_style atomic variable L equal 12 variable l2 equal 6 variable l equal 4 variable w equal 2 lattice fcc 5.405 origin 0.25 0.25 0.25 Lattice spacing in x,y,z = 5.405 5.405 5.405 region mdInternal block -$l $l -$l $l -$w $w region mdInternal block -4 $l -$l $l -$w $w region mdInternal block -4 4 -$l $l -$w $w region mdInternal block -4 4 -4 $l -$w $w region mdInternal block -4 4 -4 4 -$w $w region mdInternal block -4 4 -4 4 -2 $w region mdInternal block -4 4 -4 4 -2 2 boundary f f f # p pair_style lj/cut 13.5 read_data temp.init Reading data file ... orthogonal box = (-64.86 -64.86 -10.81) to (64.86 64.86 10.81) 2 by 2 by 1 MPI processor grid 2304 atoms 2304 velocities fix ZWALLS all wall/reflect zlo EDGE zhi EDGE mass 1 39.95 pair_coeff 1 1 .238 3.405 13.5 group internal region mdInternal 1024 atoms in group internal fix AtC internal atc two_temperature Ar_ttm.mat ATC: constructing two_temperature coupling with parameter file Ar_ttm.mat ATC: version 2.0 ATC: peratom PE compute created with ID: 3 terminate called after throwing an instance of ' ATC: 2 materials defined from Ar_ttm.mat ATC: creating two_temperature extrinsic model ATC: 2 materials defined from Ar_ttm.mat #fix_modify AtC mesh read gaussianIC2d_hex_uniform.mesh f f p fix_modify AtC mesh read gaussianIC2d_hex_uniform.exo f f p ATC: P0, ERROR: mesh file is of unknown type. ATC::ATC_Error' [pharsalus:01254] *** Process received signal *** [pharsalus:01254] Signal: Aborted (6) [pharsalus:01254] Signal code: (-6) [pharsalus:01254] [ 0] /lib64/libpthread.so.0() [0x3e7ce0f500] [pharsalus:01254] [ 1] /lib64/libc.so.6(gsignal+0x35) [0x3e7c2328a5] [pharsalus:01254] [ 2] /lib64/libc.so.6(abort+0x175) [0x3e7c234085] [pharsalus:01254] [ 3] /usr/lib64/libstdc++.so.6(_ZN9__gnu_cxx27__verbose_terminate_handlerEv+0x12d) [0x3e83ebea5d] [pharsalus:01254] [ 4] /usr/lib64/libstdc++.so.6() [0x3e83ebcbe6] [pharsalus:01254] [ 5] /usr/lib64/libstdc++.so.6() [0x3e83ebcc13] [pharsalus:01254] [ 6] /usr/lib64/libstdc++.so.6(__cxa_rethrow+0x46) [0x3e83ebcc96] [pharsalus:01254] [ 7] ../../../lmp_openmpi(_ZN9LAMMPS_NS6FixATC12modify_paramEiPPc+0x70) [0x697000] [pharsalus:01254] [ 8] ../../../lmp_openmpi(_ZN9LAMMPS_NS3Fix13modify_paramsEiPPc+0xb9) [0x691659] [pharsalus:01254] [ 9] ../../../lmp_openmpi(_ZN9LAMMPS_NS5Input15execute_commandEv+0xcab) [0x79fe8b] [pharsalus:01254] [10] ../../../lmp_openmpi(_ZN9LAMMPS_NS5Input4fileEv+0x63c) [0x7a196c] [pharsalus:01254] [11] ../../../lmp_openmpi(main+0x49) [0x7af929] [pharsalus:01254] [12] /lib64/libc.so.6(__libc_start_main+0xfd) [0x3e7c21ecdd] [pharsalus:01254] [13] ../../../lmp_openmpi() [0x53b429] [pharsalus:01254] *** End of error message *** ATC: P3, ERROR: mesh file is of unknown type. ATC: P1, ERROR: mesh file is of unknown type. terminate called after throwing an instance of 'ATC::ATC_Errorterminate called after throwing an instance of 'ATC::ATC_Error' ' [pharsalus:01257] *** Process received signal *** [pharsalus:01257] Signal: Aborted (6) [pharsalus:01257] Signal code: (-6) [pharsalus:01265] *** Process received signal *** [pharsalus:01265] Signal: Aborted (6) [pharsalus:01265] Signal code: (-6) [pharsalus:01265] [ 0] /lib64/libpthread.so.0() [0x3e7ce0f500] [pharsalus:01265] [ 1] /lib64/libc.so.6(gsignal+0x35) [0x3e7c2328a5] [pharsalus:01265] [ 2] /lib64/libc.so.6(abort+0x175) [0x3e7c234085] [pharsalus:01265] [ 3] /usr/lib64/libstdc++.so.6(_ZN9__gnu_cxx27__verbose_terminate_handlerEv+0x12d) [0x3e83ebea5d] [pharsalus:01265] [ 4] /usr/lib64/libstdc++.so.6() [0x3e83ebcbe6] [pharsalus:01265] [ 5] /usr/lib64/libstdc++.so.6() [0x3e83ebcc13] [pharsalus:01265] [ 6] /usr/lib64/libstdc++.so.6(__cxa_rethrow+0x46) [0x3e83ebcc96] [pharsalus:01265] [ 7] ../../../lmp_openmpi(_ZN9LAMMPS_NS6FixATC12modify_paramEiPPc+0x70) [0x697000] [pharsalus:01265] [ 8] ../../../lmp_openmpi(_ZN9LAMMPS_NS3Fix13modify_paramsEiPPc+0xb9) [0x691659] [pharsalus:01265] [ 9] ../../../lmp_openmpi(_ZN9LAMMPS_NS5Input15execute_commandEv+0xcab) [0x79fe8b] [pharsalus:01265] [10] ../../../lmp_openmpi(_ZN9LAMMPS_NS5Input4fileEv+0x63c) [0x7a196c] [pharsalus:01265] [11] ../../../lmp_openmpi(main+0x49) [0x7af929] [pharsalus:01265] [12] /lib64/libc.so.6(__libc_start_main+0xfd) [0x3e7c21ecdd] [pharsalus:01265] [13] ../../../lmp_openmpi() [0x53b429] [pharsalus:01265] *** End of error message *** ATC: P2, ERROR: mesh file is of unknown type. terminate called after throwing an instance of 'ATC::ATC_Error' [pharsalus:01262] *** Process received signal *** [pharsalus:01262] Signal: Aborted (6) [pharsalus:01262] Signal code: (-6) [pharsalus:01257] [ 0] /lib64/libpthread.so.0() [0x3e7ce0f500] [pharsalus:01257] [ 1] /lib64/libc.so.6(gsignal+0x35) [0x3e7c2328a5] [pharsalus:01257] [ 2] /lib64/libc.so.6(abort+0x175) [0x3e7c234085] [pharsalus:01257] [ 3] /usr/lib64/libstdc++.so.6(_ZN9__gnu_cxx27__verbose_terminate_handlerEv+0x12d) [0x3e83ebea5d] [pharsalus:01257] [ 4] /usr/lib64/libstdc++.so.6() [0x3e83ebcbe6] [pharsalus:01257] [ 5] /usr/lib64/libstdc++.so.6() [0x3e83ebcc13] [pharsalus:01257] [ 6] /usr/lib64/libstdc++.so.6(__cxa_rethrow+0x46) [0x3e83ebcc96] [pharsalus:01257] [ 7] ../../../lmp_openmpi(_ZN9LAMMPS_NS6FixATC12modify_paramEiPPc+0x70) [0x697000] [pharsalus:01257] [ 8] ../../../lmp_openmpi(_ZN9LAMMPS_NS3Fix13modify_paramsEiPPc+0xb9) [0x691659] [pharsalus:01257] [ 9] ../../../lmp_openmpi(_ZN9LAMMPS_NS5Input15execute_commandEv+0xcab) [0x79fe8b] [pharsalus:01257] [10] ../../../lmp_openmpi(_ZN9LAMMPS_NS5Input4fileEv+0x63c) [0x7a196c] [pharsalus:01257] [11] ../../../lmp_openmpi(main+0x49) [0x7af929] [pharsalus:01257] [12] /lib64/libc.so.6(__libc_start_main+0xfd) [0x3e7c21ecdd] [pharsalus:01257] [13] ../../../lmp_openmpi() [0x53b429] [pharsalus:01257] *** End of error message *** [pharsalus:01262] [ 0] /lib64/libpthread.so.0() [0x3e7ce0f500] [pharsalus:01262] [ 1] /lib64/libc.so.6(gsignal+0x35) [0x3e7c2328a5] [pharsalus:01262] [ 2] /lib64/libc.so.6(abort+0x175) [0x3e7c234085] [pharsalus:01262] [ 3] /usr/lib64/libstdc++.so.6(_ZN9__gnu_cxx27__verbose_terminate_handlerEv+0x12d) [0x3e83ebea5d] [pharsalus:01262] [ 4] /usr/lib64/libstdc++.so.6() [0x3e83ebcbe6] [pharsalus:01262] [ 5] /usr/lib64/libstdc++.so.6() [0x3e83ebcc13] [pharsalus:01262] [ 6] /usr/lib64/libstdc++.so.6(__cxa_rethrow+0x46) [0x3e83ebcc96] [pharsalus:01262] [ 7] ../../../lmp_openmpi(_ZN9LAMMPS_NS6FixATC12modify_paramEiPPc+0x70) [0x697000] [pharsalus:01262] [ 8] ../../../lmp_openmpi(_ZN9LAMMPS_NS3Fix13modify_paramsEiPPc+0xb9) [0x691659] [pharsalus:01262] [ 9] ../../../lmp_openmpi(_ZN9LAMMPS_NS5Input15execute_commandEv+0xcab) [0x79fe8b] [pharsalus:01262] [10] ../../../lmp_openmpi(_ZN9LAMMPS_NS5Input4fileEv+0x63c) [0x7a196c] [pharsalus:01262] [11] ../../../lmp_openmpi(main+0x49) [0x7af929] [pharsalus:01262] [12] /lib64/libc.so.6(__libc_start_main+0xfd) [0x3e7c21ecdd] [pharsalus:01262] [13] ../../../lmp_openmpi() [0x53b429] [pharsalus:01262] *** End of error message *** -------------------------------------------------------------------------- mpirun noticed that process rank 1 with PID 1257 on node pharsalus exited on signal 6 (Aborted). -------------------------------------------------------------------------- 2 total processes killed (some possibly by mpirun during cleanup)