LAMMPS (6 Oct 2016) # 3d Lennard-Jones melt variable x index 1 variable y index 1 variable z index 1 variable xx equal 20*$x variable xx equal 20*1 variable yy equal 20*$y variable yy equal 20*1 variable zz equal 20*$z variable zz equal 20*1 units lj atom_style atomic lattice fcc 0.8442 Lattice spacing in x,y,z = 1.6796 1.6796 1.6796 region box block 0 ${xx} 0 ${yy} 0 ${zz} region box block 0 20 0 ${yy} 0 ${zz} region box block 0 20 0 20 0 ${zz} region box block 0 20 0 20 0 20 create_box 1 box Created orthogonal box = (0 0 0) to (33.5919 33.5919 33.5919) 1 by 2 by 2 MPI processor grid create_atoms 1 box Created 32000 atoms mass 1 1.0 velocity all create 1.44 87287 loop geom pair_style lj/cut 2.5 pair_coeff 1 1 1.0 1.0 2.5 neighbor 0.3 bin neigh_modify delay 0 every 20 check no fix 1 all nve run 100 Neighbor list info ... 1 neighbor list requests update every 20 steps, delay 0 steps, check no max neighbors/atom: 2000, page size: 100000 master list distance cutoff = 2.8 ghost atom cutoff = 2.8 binsize = 1.4 -> bins = 24 24 24 Memory usage per processor = 4.09506 Mbytes Step Temp E_pair E_mol TotEng Press 0 1.44 -6.7733681 0 -4.6134356 -5.0197073 100 0.7574531 -5.7585055 0 -4.6223613 0.20726105 Loop time of 0.635957 on 4 procs for 100 steps with 32000 atoms Performance: 67929.172 tau/day, 157.243 timesteps/s 99.9% CPU use with 4 MPI tasks x no OpenMP threads MPI task timing breakdown: Section | min time | avg time | max time |%varavg| %total --------------------------------------------------------------- Pair | 0.51335 | 0.51822 | 0.52569 | 0.7 | 81.49 Neigh | 0.063695 | 0.064309 | 0.065397 | 0.3 | 10.11 Comm | 0.027525 | 0.03629 | 0.041959 | 3.1 | 5.71 Output | 6.3896e-05 | 6.6698e-05 | 7.081e-05 | 0.0 | 0.01 Modify | 0.012472 | 0.01254 | 0.012618 | 0.1 | 1.97 Other | | 0.004529 | | | 0.71 Nlocal: 8000 ave 8037 max 7964 min Histogram: 2 0 0 0 0 0 0 0 1 1 Nghost: 9007.5 ave 9050 max 8968 min Histogram: 1 1 0 0 0 0 0 1 0 1 Neighs: 300708 ave 305113 max 297203 min Histogram: 1 0 0 1 1 0 0 0 0 1 Total # of neighbors = 1202833 Ave neighs/atom = 37.5885 Neighbor list builds = 5 Dangerous builds not checked Total wall time: 0:00:00