/* ---------------------------------------------------------------------- LAMMPS - Large-scale Atomic/Molecular Massively Parallel Simulator http://lammps.sandia.gov, Sandia National Laboratories Steve Plimpton, sjplimp@sandia.gov Copyright (2003) Sandia Corporation. Under the terms of Contract DE-AC04-94AL85000 with Sandia Corporation, the U.S. Government retains certain rights in this software. This software is distributed under the GNU General Public License. See the README file in the top-level LAMMPS directory. ------------------------------------------------------------------------- */ #include "fix_halt.h" #include #include #include #include "update.h" #include "force.h" #include "input.h" #include "variable.h" #include "atom.h" #include "neighbor.h" #include "modify.h" #include "comm.h" #include "timer.h" #include "error.h" using namespace LAMMPS_NS; using namespace FixConst; enum{BONDMAX,TLIMIT,VARIABLE}; enum{LT,LE,GT,GE,EQ,NEQ,XOR}; enum{HARD,SOFT,CONTINUE}; enum{NOMSG,YESMSG}; /* ---------------------------------------------------------------------- */ FixHalt::FixHalt(LAMMPS *lmp, int narg, char **arg) : Fix(lmp, narg, arg), idvar(NULL) { if (narg < 7) error->all(FLERR,"Illegal fix halt command"); nevery = force->inumeric(FLERR,arg[3]); if (nevery <= 0) error->all(FLERR,"Illegal fix halt command"); // comparison args idvar = NULL; if (strcmp(arg[4],"tlimit") == 0) attribute = TLIMIT; else if (strcmp(arg[4],"bondmax") == 0) attribute = BONDMAX; else if (strncmp(arg[4],"v_",2) == 0) { attribute = VARIABLE; int n = strlen(arg[4]); idvar = new char[n]; strcpy(idvar,&arg[4][2]); ivar = input->variable->find(idvar); if (ivar < 0) error->all(FLERR,"Could not find fix halt variable name"); if (input->variable->equalstyle(ivar) == 0) error->all(FLERR,"Fix halt variable is not equal-style variable"); } else error->all(FLERR,"Invalid fix halt attribute"); if (strcmp(arg[5],"<") == 0) operation = LT; else if (strcmp(arg[5],"<=") == 0) operation = LE; else if (strcmp(arg[5],">") == 0) operation = GT; else if (strcmp(arg[5],">=") == 0) operation = GE; else if (strcmp(arg[5],"==") == 0) operation = EQ; else if (strcmp(arg[5],"!=") == 0) operation = NEQ; else if (strcmp(arg[5],"|^") == 0) operation = XOR; else error->all(FLERR,"Invalid fix halt operator"); value = force->numeric(FLERR,arg[6]); // parse optional args eflag = SOFT; msgflag = YESMSG; int iarg = 7; while (iarg < narg) { if (strcmp(arg[iarg],"error") == 0) { if (iarg+2 > narg) error->all(FLERR,"Illegal fix halt command"); if (strcmp(arg[iarg+1],"hard") == 0) eflag = HARD; else if (strcmp(arg[iarg+1],"soft") == 0) eflag = SOFT; else if (strcmp(arg[iarg+1],"continue") == 0) eflag = CONTINUE; else error->all(FLERR,"Illegal fix halt command"); iarg += 2; } else if (strcmp(arg[iarg],"message") == 0) { if (iarg+2 > narg) error->all(FLERR,"Illegal fix halt command"); if (strcmp(arg[iarg+1],"no") == 0) msgflag = NOMSG; else if (strcmp(arg[iarg+1],"yes") == 0) msgflag = YESMSG; else error->all(FLERR,"Illegal fix halt command"); iarg += 2; } else error->all(FLERR,"Illegal fix halt command"); } // add nfirst to all computes that store invocation times // since don't know a priori which are invoked via variables by this fix // once in end_of_step() can set timestep for ones actually invoked if (attribute == VARIABLE) { const bigint nfirst = (update->ntimestep/nevery)*nevery + nevery; modify->addstep_compute_all(nfirst); } } /* ---------------------------------------------------------------------- */ FixHalt::~FixHalt() { delete [] idvar; } /* ---------------------------------------------------------------------- */ int FixHalt::setmask() { int mask = 0; mask |= END_OF_STEP; mask |= POST_RUN; mask |= MIN_POST_FORCE; return mask; } /* ---------------------------------------------------------------------- */ void FixHalt::init() { // set ivar from current variable list if (attribute == VARIABLE) { ivar = input->variable->find(idvar); if (ivar < 0) error->all(FLERR,"Could not find fix halt variable name"); if (input->variable->equalstyle(ivar) == 0) error->all(FLERR,"Fix halt variable is not equal-style variable"); } // settings used by TLIMIT nextstep = (update->ntimestep/nevery)*nevery + nevery; thisstep = -1; tratio = 0.5; } /* ---------------------------------------------------------------------- */ void FixHalt::min_post_force(int /* vflag */) { if (update->ntimestep == thisstep) return; if ((update->ntimestep % nevery) == 0) end_of_step(); thisstep = update->ntimestep; } /* ---------------------------------------------------------------------- */ void FixHalt::end_of_step() { // variable evaluation may invoke computes so wrap with clear/add double attvalue; if (attribute == TLIMIT) { if (update->ntimestep != nextstep) return; attvalue = tlimit(); } else if (attribute == BONDMAX) { attvalue = bondmax(); } else { modify->clearstep_compute(); attvalue = input->variable->compute_equal(ivar); modify->addstep_compute(update->ntimestep + nevery); } // check if halt is triggered, else just return if (operation == LT) { if (attvalue >= value) return; } else if (operation == LE) { if (attvalue > value) return; } else if (operation == GT) { if (attvalue <= value) return; } else if (operation == GE) { if (attvalue < value) return; } else if (operation == EQ) { if (attvalue != value) return; } else if (operation == NEQ) { if (attvalue == value) return; } else if (operation == XOR) { if ((attvalue == 0.0 && value == 0.0) || (attvalue != 0.0 && value != 0.0)) return; } // hard halt -> exit LAMMPS // soft/continue halt -> trigger timer to break from run loop // print message with ID of fix halt in case multiple instances char str[128]; sprintf(str,"Fix halt %s condition met on step " BIGINT_FORMAT " with value %g", id,update->ntimestep,attvalue); if (eflag == HARD) { error->all(FLERR,str); } else if (eflag == SOFT || eflag == CONTINUE) { if (comm->me == 0 && msgflag == YESMSG) error->message(FLERR,str); timer->force_timeout(); } } /* ---------------------------------------------------------------------- reset expired timer setting to original value, if requested ------------------------------------------------------------------------- */ void FixHalt::post_run() { // continue halt -> subsequent runs are allowed if (eflag == CONTINUE) timer->reset_timeout(); } /* ---------------------------------------------------------------------- compute max length of any bond using Neighbor bondlist for each proc ------------------------------------------------------------------------- */ double FixHalt::bondmax() { double **x = atom->x; int **bondlist = neighbor->bondlist; int nbondlist = neighbor->nbondlist; int i1,i2; double delx,dely,delz,rsq; double maxone = 0.0; for (int n = 0; n < nbondlist; n++) { i1 = bondlist[n][0]; i2 = bondlist[n][1]; delx = x[i1][0] - x[i2][0]; dely = x[i1][1] - x[i2][1]; delz = x[i1][2] - x[i2][2]; rsq = delx*delx + dely*dely + delz*delz; maxone = MAX(rsq,maxone); } double maxall; MPI_Allreduce(&maxone,&maxall,1,MPI_DOUBLE,MPI_MAX,world); return sqrt(maxall); } /* ---------------------------------------------------------------------- compute synced elapsed time reset nextstep = estimate of timestep when run will end first project to 1/2 the run time, thereafter to end of run ------------------------------------------------------------------------- */ double FixHalt::tlimit() { double cpu = timer->elapsed(Timer::TOTAL); MPI_Bcast(&cpu,1,MPI_DOUBLE,0,world); if (cpu < value) { bigint elapsed = update->ntimestep - update->firststep; bigint final = update->firststep + static_cast (tratio*value/cpu * elapsed); nextstep = (final/nevery)*nevery + nevery; if (nextstep == update->ntimestep) nextstep += nevery; tratio = 1.0; } return cpu; }