/* ---------------------------------------------------------------------- LAMMPS - Large-scale Atomic/Molecular Massively Parallel Simulator https://lammps.sandia.gov/, Sandia National Laboratories Steve Plimpton, sjplimp@sandia.gov Copyright (2003) Sandia Corporation. Under the terms of Contract DE-AC04-94AL85000 with Sandia Corporation, the U.S. Government retains certain rights in this software. This software is distributed under the GNU General Public License. See the README file in the top-level LAMMPS directory. ------------------------------------------------------------------------- */ /* ---------------------------------------------------------------------- Contributing author: Pieter J. in 't Veld (SNL) ------------------------------------------------------------------------- */ #include "pair_buck_long_coul_long.h" #include #include #include "math_vector.h" #include "atom.h" #include "comm.h" #include "neighbor.h" #include "neigh_list.h" #include "neigh_request.h" #include "force.h" #include "kspace.h" #include "update.h" #include "respa.h" #include "memory.h" #include "error.h" using namespace LAMMPS_NS; #define EWALD_F 1.12837917 #define EWALD_P 0.3275911 #define A1 0.254829592 #define A2 -0.284496736 #define A3 1.421413741 #define A4 -1.453152027 #define A5 1.061405429 /* ---------------------------------------------------------------------- */ PairBuckLongCoulLong::PairBuckLongCoulLong(LAMMPS *lmp) : Pair(lmp) { dispersionflag = ewaldflag = pppmflag = 1; respa_enable = 1; writedata = 1; ftable = nullptr; fdisptable = nullptr; cut_respa = nullptr; } /* ---------------------------------------------------------------------- global settings ------------------------------------------------------------------------- */ void PairBuckLongCoulLong::options(char **arg, int order) { const char *option[] = {"long", "cut", "off", nullptr}; int i; if (!*arg) error->all(FLERR,"Illegal pair_style buck/long/coul/long command"); for (i=0; option[i]&&strcmp(arg[0], option[i]); ++i); switch (i) { case 0: ewald_order |= 1<all(FLERR,"Illegal pair_style buck/long/coul/long command"); } } /* ---------------------------------------------------------------------- */ void PairBuckLongCoulLong::settings(int narg, char **arg) { if (narg != 3 && narg != 4) error->all(FLERR,"Illegal pair_style command"); ewald_order = 0; ewald_off = 0; options(arg,6); options(++arg,1); if (!comm->me && ewald_order == ((1<<1) | (1<<6))) error->warning(FLERR,"Using largest cutoff for buck/long/coul/long"); if (!*(++arg)) error->all(FLERR,"Cutoffs missing in pair_style buck/long/coul/long"); if (!((ewald_order^ewald_off) & (1<<6))) dispersionflag = 0; if (ewald_off & (1<<6)) error->all(FLERR,"LJ6 off not supported in pair_style buck/long/coul/long"); if (!((ewald_order^ewald_off) & (1<<1))) error->all(FLERR, "Coulomb cut not supported in pair_style buck/long/coul/coul"); cut_buck_global = utils::numeric(FLERR,*(arg++),false,lmp); if (narg == 4 && ((ewald_order & 0x42) == 0x42)) error->all(FLERR,"Only one cutoff allowed when requesting all long"); if (narg == 4) cut_coul = utils::numeric(FLERR,*arg,false,lmp); else cut_coul = cut_buck_global; if (allocated) { int i,j; for (i = 1; i <= atom->ntypes; i++) for (j = i; j <= atom->ntypes; j++) if (setflag[i][j]) cut_buck[i][j] = cut_buck_global; } } /* ---------------------------------------------------------------------- free all arrays ------------------------------------------------------------------------- */ PairBuckLongCoulLong::~PairBuckLongCoulLong() { if (allocated) { memory->destroy(setflag); memory->destroy(cutsq); memory->destroy(cut_buck_read); memory->destroy(cut_buck); memory->destroy(cut_bucksq); memory->destroy(buck_a_read); memory->destroy(buck_a); memory->destroy(buck_c_read); memory->destroy(buck_c); memory->destroy(buck_rho_read); memory->destroy(buck_rho); memory->destroy(buck1); memory->destroy(buck2); memory->destroy(rhoinv); memory->destroy(offset); } if (ftable) free_tables(); if (fdisptable) free_disp_tables(); } /* ---------------------------------------------------------------------- allocate all arrays ------------------------------------------------------------------------- */ void PairBuckLongCoulLong::allocate() { allocated = 1; int n = atom->ntypes; memory->create(setflag,n+1,n+1,"pair:setflag"); for (int i = 1; i <= n; i++) for (int j = i; j <= n; j++) setflag[i][j] = 0; memory->create(cutsq,n+1,n+1,"pair:cutsq"); memory->create(cut_buck_read,n+1,n+1,"pair:cut_buck_read"); memory->create(cut_buck,n+1,n+1,"pair:cut_buck"); memory->create(cut_bucksq,n+1,n+1,"pair:cut_bucksq"); memory->create(buck_a_read,n+1,n+1,"pair:buck_a_read"); memory->create(buck_a,n+1,n+1,"pair:buck_a"); memory->create(buck_c_read,n+1,n+1,"pair:buck_c_read"); memory->create(buck_c,n+1,n+1,"pair:buck_c"); memory->create(buck_rho_read,n+1,n+1,"pair:buck_rho_read"); memory->create(buck_rho,n+1,n+1,"pair:buck_rho"); memory->create(buck1,n+1,n+1,"pair:buck1"); memory->create(buck2,n+1,n+1,"pair:buck2"); memory->create(rhoinv,n+1,n+1,"pair:rhoinv"); memory->create(offset,n+1,n+1,"pair:offset"); } /* ---------------------------------------------------------------------- extract protected data from object ------------------------------------------------------------------------- */ void *PairBuckLongCoulLong::extract(const char *id, int &dim) { const char *ids[] = { "B", "ewald_order", "ewald_cut", "ewald_mix", "cut_coul", "cut_LJ", nullptr}; void *ptrs[] = { buck_c, &ewald_order, &cut_coul, &mix_flag, &cut_coul, &cut_buck_global, nullptr}; int i; for (i=0; ids[i]&&strcmp(ids[i], id); ++i); if (i == 0) dim = 2; else dim = 0; return ptrs[i]; } /* ---------------------------------------------------------------------- set coeffs for one or more type pairs ------------------------------------------------------------------------- */ void PairBuckLongCoulLong::coeff(int narg, char **arg) { if (narg < 5 || narg > 6) error->all(FLERR,"Incorrect args for pair coefficients"); if (!allocated) allocate(); int ilo,ihi,jlo,jhi; utils::bounds(FLERR,*(arg++),1,atom->ntypes,ilo,ihi,error); utils::bounds(FLERR,*(arg++),1,atom->ntypes,jlo,jhi,error); double buck_a_one = utils::numeric(FLERR,*(arg++),false,lmp); double buck_rho_one = utils::numeric(FLERR,*(arg++),false,lmp); double buck_c_one = utils::numeric(FLERR,*(arg++),false,lmp); double cut_buck_one = cut_buck_global; if (narg == 6) cut_buck_one = utils::numeric(FLERR,*(arg++),false,lmp); int count = 0; for (int i = ilo; i <= ihi; i++) { for (int j = MAX(jlo,i); j <= jhi; j++) { buck_a_read[i][j] = buck_a_one; buck_c_read[i][j] = buck_c_one; buck_rho_read[i][j] = buck_rho_one; cut_buck_read[i][j] = cut_buck_one; setflag[i][j] = 1; count++; } } if (count == 0) error->all(FLERR,"Incorrect args for pair coefficients"); } /* ---------------------------------------------------------------------- init specific to this pair style ------------------------------------------------------------------------- */ void PairBuckLongCoulLong::init_style() { // require an atom style with charge defined if (!atom->q_flag && (ewald_order&(1<<1))) error->all(FLERR, "Invoking coulombic in pair style buck/long/coul/long " "requires atom attribute q"); // ensure use of KSpace long-range solver, set two g_ewalds if (force->kspace == nullptr) error->all(FLERR,"Pair style requires a KSpace style"); if (ewald_order&(1<<1)) g_ewald = force->kspace->g_ewald; if (ewald_order&(1<<6)) g_ewald_6 = force->kspace->g_ewald_6; // set rRESPA cutoffs if (strstr(update->integrate_style,"respa") && ((Respa *) update->integrate)->level_inner >= 0) cut_respa = ((Respa *) update->integrate)->cutoff; else cut_respa = nullptr; // setup force tables if (ncoultablebits && (ewald_order&(1<<1))) init_tables(cut_coul,cut_respa); if (ndisptablebits && (ewald_order&(1<<6))) init_tables_disp(cut_buck_global); // request regular or rRESPA neighbor lists if neighrequest_flag != 0 if (force->kspace->neighrequest_flag) { int irequest; int respa = 0; if (update->whichflag == 1 && strstr(update->integrate_style,"respa")) { if (((Respa *) update->integrate)->level_inner >= 0) respa = 1; if (((Respa *) update->integrate)->level_middle >= 0) respa = 2; } irequest = neighbor->request(this,instance_me); if (respa >= 1) { neighbor->requests[irequest]->respaouter = 1; neighbor->requests[irequest]->respainner = 1; } if (respa == 2) neighbor->requests[irequest]->respamiddle = 1; } cut_coulsq = cut_coul * cut_coul; } /* ---------------------------------------------------------------------- init for one type pair i,j and corresponding j,i ------------------------------------------------------------------------- */ double PairBuckLongCoulLong::init_one(int i, int j) { if (setflag[i][j] == 0) error->all(FLERR,"All pair coeffs are not set"); if (ewald_order&(1<<6)) cut_buck[i][j] = cut_buck_global; else cut_buck[i][j] = cut_buck_read[i][j]; buck_a[i][j] = buck_a_read[i][j]; buck_c[i][j] = buck_c_read[i][j]; buck_rho[i][j] = buck_rho_read[i][j]; double cut = MAX(cut_buck[i][j],cut_coul); cutsq[i][j] = cut*cut; cut_bucksq[i][j] = cut_buck[i][j] * cut_buck[i][j]; buck1[i][j] = buck_a[i][j]/buck_rho[i][j]; buck2[i][j] = 6.0*buck_c[i][j]; rhoinv[i][j] = 1.0/buck_rho[i][j]; // check interior rRESPA cutoff if (cut_respa && MIN(cut_buck[i][j],cut_coul) < cut_respa[3]) error->all(FLERR,"Pair cutoff < Respa interior cutoff"); if (offset_flag && (cut_buck[i][j] > 0.0)) { double rexp = exp(-cut_buck[i][j]/buck_rho[i][j]); offset[i][j] = buck_a[i][j]*rexp - buck_c[i][j]/pow(cut_buck[i][j],6.0); } else offset[i][j] = 0.0; cutsq[j][i] = cutsq[i][j]; cut_bucksq[j][i] = cut_bucksq[i][j]; buck_a[j][i] = buck_a[i][j]; buck_c[j][i] = buck_c[i][j]; rhoinv[j][i] = rhoinv[i][j]; buck1[j][i] = buck1[i][j]; buck2[j][i] = buck2[i][j]; offset[j][i] = offset[i][j]; return cut; } /* ---------------------------------------------------------------------- proc 0 writes to restart file ------------------------------------------------------------------------- */ void PairBuckLongCoulLong::write_restart(FILE *fp) { write_restart_settings(fp); int i,j; for (i = 1; i <= atom->ntypes; i++) for (j = i; j <= atom->ntypes; j++) { fwrite(&setflag[i][j],sizeof(int),1,fp); if (setflag[i][j]) { fwrite(&buck_a_read[i][j],sizeof(double),1,fp); fwrite(&buck_rho_read[i][j],sizeof(double),1,fp); fwrite(&buck_c_read[i][j],sizeof(double),1,fp); fwrite(&cut_buck_read[i][j],sizeof(double),1,fp); } } } /* ---------------------------------------------------------------------- proc 0 reads from restart file, bcasts ------------------------------------------------------------------------- */ void PairBuckLongCoulLong::read_restart(FILE *fp) { read_restart_settings(fp); allocate(); int i,j; int me = comm->me; for (i = 1; i <= atom->ntypes; i++) for (j = i; j <= atom->ntypes; j++) { if (me == 0) utils::sfread(FLERR,&setflag[i][j],sizeof(int),1,fp,nullptr,error); MPI_Bcast(&setflag[i][j],1,MPI_INT,0,world); if (setflag[i][j]) { if (me == 0) { utils::sfread(FLERR,&buck_a_read[i][j],sizeof(double),1,fp,nullptr,error); utils::sfread(FLERR,&buck_rho_read[i][j],sizeof(double),1,fp,nullptr,error); utils::sfread(FLERR,&buck_c_read[i][j],sizeof(double),1,fp,nullptr,error); utils::sfread(FLERR,&cut_buck_read[i][j],sizeof(double),1,fp,nullptr,error); } MPI_Bcast(&buck_a_read[i][j],1,MPI_DOUBLE,0,world); MPI_Bcast(&buck_rho_read[i][j],1,MPI_DOUBLE,0,world); MPI_Bcast(&buck_c_read[i][j],1,MPI_DOUBLE,0,world); MPI_Bcast(&cut_buck_read[i][j],1,MPI_DOUBLE,0,world); } } } /* ---------------------------------------------------------------------- proc 0 writes to restart file ------------------------------------------------------------------------- */ void PairBuckLongCoulLong::write_restart_settings(FILE *fp) { fwrite(&cut_buck_global,sizeof(double),1,fp); fwrite(&cut_coul,sizeof(double),1,fp); fwrite(&offset_flag,sizeof(int),1,fp); fwrite(&mix_flag,sizeof(int),1,fp); fwrite(&ncoultablebits,sizeof(int),1,fp); fwrite(&tabinner,sizeof(double),1,fp); fwrite(&ewald_order,sizeof(int),1,fp); fwrite(&dispersionflag,sizeof(int),1,fp); } /* ---------------------------------------------------------------------- proc 0 reads from restart file, bcasts ------------------------------------------------------------------------- */ void PairBuckLongCoulLong::read_restart_settings(FILE *fp) { if (comm->me == 0) { utils::sfread(FLERR,&cut_buck_global,sizeof(double),1,fp,nullptr,error); utils::sfread(FLERR,&cut_coul,sizeof(double),1,fp,nullptr,error); utils::sfread(FLERR,&offset_flag,sizeof(int),1,fp,nullptr,error); utils::sfread(FLERR,&mix_flag,sizeof(int),1,fp,nullptr,error); utils::sfread(FLERR,&ncoultablebits,sizeof(int),1,fp,nullptr,error); utils::sfread(FLERR,&tabinner,sizeof(double),1,fp,nullptr,error); utils::sfread(FLERR,&ewald_order,sizeof(int),1,fp,nullptr,error); utils::sfread(FLERR,&dispersionflag,sizeof(int),1,fp,nullptr,error); } MPI_Bcast(&cut_buck_global,1,MPI_DOUBLE,0,world); MPI_Bcast(&cut_coul,1,MPI_DOUBLE,0,world); MPI_Bcast(&offset_flag,1,MPI_INT,0,world); MPI_Bcast(&mix_flag,1,MPI_INT,0,world); MPI_Bcast(&ncoultablebits,1,MPI_INT,0,world); MPI_Bcast(&tabinner,1,MPI_DOUBLE,0,world); MPI_Bcast(&ewald_order,1,MPI_INT,0,world); MPI_Bcast(&dispersionflag,1,MPI_INT,0,world); } /* ---------------------------------------------------------------------- proc 0 writes to data file ------------------------------------------------------------------------- */ void PairBuckLongCoulLong::write_data(FILE *fp) { for (int i = 1; i <= atom->ntypes; i++) fprintf(fp,"%d %g %g %g\n",i, buck_a_read[i][i],buck_rho_read[i][i],buck_c_read[i][i]); } /* ---------------------------------------------------------------------- proc 0 writes all pairs to data file ------------------------------------------------------------------------- */ void PairBuckLongCoulLong::write_data_all(FILE *fp) { for (int i = 1; i <= atom->ntypes; i++) { for (int j = i; j <= atom->ntypes; j++) { if (ewald_order & (1<<6)) { fprintf(fp,"%d %d %g %g\n",i,j, buck_a_read[i][j],buck_rho_read[i][j]); } else { fprintf(fp,"%d %d %g %g %g\n",i,j, buck_a_read[i][j],buck_rho_read[i][j],buck_c_read[i][j]); } } } } /* ---------------------------------------------------------------------- compute pair interactions ------------------------------------------------------------------------- */ void PairBuckLongCoulLong::compute(int eflag, int vflag) { double evdwl,ecoul,fpair; evdwl = ecoul = 0.0; ev_init(eflag,vflag); double **x = atom->x, *x0 = x[0]; double **f = atom->f, *f0 = f[0], *fi = f0; double *q = atom->q; int *type = atom->type; int nlocal = atom->nlocal; double *special_coul = force->special_coul; double *special_lj = force->special_lj; int newton_pair = force->newton_pair; double qqrd2e = force->qqrd2e; int i, j, order1 = ewald_order&(1<<1), order6 = ewald_order&(1<<6); int *ineigh, *ineighn, *jneigh, *jneighn, typei, typej, ni; double qi = 0.0, qri = 0.0, *cutsqi, *cut_bucksqi, *buck1i, *buck2i, *buckai, *buckci, *rhoinvi, *offseti; double r, rsq, r2inv, force_coul, force_buck; double g2 = g_ewald_6*g_ewald_6, g6 = g2*g2*g2, g8 = g6*g2; vector xi, d; ineighn = (ineigh = list->ilist)+list->inum; for (; ineighfirstneigh[i])+list->numneigh[i]; for (; jneigh= cutsqi[typej = type[j]]) continue; r2inv = 1.0/rsq; r = sqrt(rsq); if (order1 && (rsq < cut_coulsq)) { // coulombic if (!ncoultablebits || rsq <= tabinnersq) { // series real space double x = g_ewald*r; double s = qri*q[j], t = 1.0/(1.0+EWALD_P*x); if (ni == 0) { s *= g_ewald*exp(-x*x); force_coul = (t *= ((((t*A5+A4)*t+A3)*t+A2)*t+A1)*s/x)+EWALD_F*s; if (eflag) ecoul = t; } else { // special case double f = s*(1.0-special_coul[ni])/r; s *= g_ewald*exp(-x*x); force_coul = (t *= ((((t*A5+A4)*t+A3)*t+A2)*t+A1)*s/x)+EWALD_F*s-f; if (eflag) ecoul = t-f; } } // table real space else { union_int_float_t t; t.f = rsq; const int k = (t.i & ncoulmask) >> ncoulshiftbits; double f = (rsq-rtable[k])*drtable[k], qiqj = qi*q[j]; if (ni == 0) { force_coul = qiqj*(ftable[k]+f*dftable[k]); if (eflag) ecoul = qiqj*(etable[k]+f*detable[k]); } else { // special case t.f = (1.0-special_coul[ni])*(ctable[k]+f*dctable[k]); force_coul = qiqj*(ftable[k]+f*dftable[k]-t.f); if (eflag) ecoul = qiqj*(etable[k]+f*detable[k]-t.f); } } } else force_coul = ecoul = 0.0; if (rsq < cut_bucksqi[typej]) { // buckingham double rn = r2inv*r2inv*r2inv, expr = exp(-r*rhoinvi[typej]); if (order6) { // long-range if (!ndisptablebits || rsq <= tabinnerdispsq) { double x2 = g2*rsq, a2 = 1.0/x2; x2 = a2*exp(-x2)*buckci[typej]; if (ni == 0) { force_buck = r*expr*buck1i[typej]-g8*(((6.0*a2+6.0)*a2+3.0)*a2+1.0)*x2*rsq; if (eflag) evdwl = expr*buckai[typej]-g6*((a2+1.0)*a2+0.5)*x2; } else { // special case double f = special_lj[ni], t = rn*(1.0-f); force_buck = f*r*expr*buck1i[typej]- g8*(((6.0*a2+6.0)*a2+3.0)*a2+1.0)*x2*rsq+t*buck2i[typej]; if (eflag) evdwl = f*expr*buckai[typej] - g6*((a2+1.0)*a2+0.5)*x2+t*buckci[typej]; } } else { //table real space union_int_float_t disp_t; disp_t.f = rsq; const int disp_k = (disp_t.i & ndispmask)>>ndispshiftbits; double f_disp = (rsq-rdisptable[disp_k])*drdisptable[disp_k]; if (ni == 0) { force_buck = r*expr*buck1i[typej]-(fdisptable[disp_k]+f_disp*dfdisptable[disp_k])*buckci[typej]; if (eflag) evdwl = expr*buckai[typej]-(edisptable[disp_k]+f_disp*dedisptable[disp_k])*buckci[typej]; } else { //special case double f = special_lj[ni], t = rn*(1.0-f); force_buck = f*r*expr*buck1i[typej] -(fdisptable[disp_k]+f_disp*dfdisptable[disp_k])*buckci[typej] +t*buck2i[typej]; if (eflag) evdwl = f*expr*buckai[typej] -(edisptable[disp_k]+f_disp*dedisptable[disp_k])*buckci[typej]+t*buckci[typej]; } } } else { // cut if (ni == 0) { force_buck = r*expr*buck1i[typej]-rn*buck2i[typej]; if (eflag) evdwl = expr*buckai[typej] - rn*buckci[typej]-offseti[typej]; } else { // special case double f = special_lj[ni]; force_buck = f*(r*expr*buck1i[typej]-rn*buck2i[typej]); if (eflag) evdwl = f*(expr*buckai[typej]-rn*buckci[typej]-offseti[typej]); } } } else force_buck = evdwl = 0.0; fpair = (force_coul+force_buck)*r2inv; if (newton_pair || j < nlocal) { double *fj = f0+(j+(j<<1)), f; fi[0] += f = d[0]*fpair; fj[0] -= f; fi[1] += f = d[1]*fpair; fj[1] -= f; fi[2] += f = d[2]*fpair; fj[2] -= f; } else { fi[0] += d[0]*fpair; fi[1] += d[1]*fpair; fi[2] += d[2]*fpair; } if (evflag) ev_tally(i,j,nlocal,newton_pair, evdwl,ecoul,fpair,d[0],d[1],d[2]); } } if (vflag_fdotr) virial_fdotr_compute(); } /* ---------------------------------------------------------------------- */ void PairBuckLongCoulLong::compute_inner() { double r, rsq, r2inv, force_coul = 0.0, force_buck, fpair; int *type = atom->type; int nlocal = atom->nlocal; double *x0 = atom->x[0], *f0 = atom->f[0], *fi = f0, *q = atom->q; double *special_coul = force->special_coul; double *special_lj = force->special_lj; int newton_pair = force->newton_pair; double qqrd2e = force->qqrd2e; double cut_out_on = cut_respa[0]; double cut_out_off = cut_respa[1]; double cut_out_diff = cut_out_off - cut_out_on; double cut_out_on_sq = cut_out_on*cut_out_on; double cut_out_off_sq = cut_out_off*cut_out_off; int *ineigh, *ineighn, *jneigh, *jneighn, typei, typej, ni; int i, j, order1 = (ewald_order|(ewald_off^-1))&(1<<1); double qri, *cut_bucksqi, *buck1i, *buck2i, *rhoinvi; vector xi, d; ineighn = (ineigh = list->ilist_inner) + list->inum_inner; for (; ineighfirstneigh_inner[i])+list->numneigh_inner[i]; for (; jneigh= cut_out_off_sq) continue; r2inv = 1.0/rsq; r = sqrt(rsq); if (order1 && (rsq < cut_coulsq)) // coulombic force_coul = ni == 0 ? qri*q[j]/r : qri*q[j]/r*special_coul[ni]; if (rsq < cut_bucksqi[typej = type[j]]) { // buckingham double rn = r2inv*r2inv*r2inv, expr = exp(-r*rhoinvi[typej]); force_buck = ni == 0 ? (r*expr*buck1i[typej]-rn*buck2i[typej]) : (r*expr*buck1i[typej]-rn*buck2i[typej])*special_lj[ni]; } else force_buck = 0.0; fpair = (force_coul + force_buck) * r2inv; if (rsq > cut_out_on_sq) { // switching double rsw = (sqrt(rsq) - cut_out_on)/cut_out_diff; fpair *= 1.0 + rsw*rsw*(2.0*rsw-3.0); } if (newton_pair || j < nlocal) { // force update double *fj = f0+(j+(j<<1)), f; fi[0] += f = d[0]*fpair; fj[0] -= f; fi[1] += f = d[1]*fpair; fj[1] -= f; fi[2] += f = d[2]*fpair; fj[2] -= f; } else { fi[0] += d[0]*fpair; fi[1] += d[1]*fpair; fi[2] += d[2]*fpair; } } } } /* ---------------------------------------------------------------------- */ void PairBuckLongCoulLong::compute_middle() { double r, rsq, r2inv, force_coul = 0.0, force_buck, fpair; int *type = atom->type; int nlocal = atom->nlocal; double *x0 = atom->x[0], *f0 = atom->f[0], *fi = f0, *q = atom->q; double *special_coul = force->special_coul; double *special_lj = force->special_lj; int newton_pair = force->newton_pair; double qqrd2e = force->qqrd2e; double cut_in_off = cut_respa[0]; double cut_in_on = cut_respa[1]; double cut_out_on = cut_respa[2]; double cut_out_off = cut_respa[3]; double cut_in_diff = cut_in_on - cut_in_off; double cut_out_diff = cut_out_off - cut_out_on; double cut_in_off_sq = cut_in_off*cut_in_off; double cut_in_on_sq = cut_in_on*cut_in_on; double cut_out_on_sq = cut_out_on*cut_out_on; double cut_out_off_sq = cut_out_off*cut_out_off; int *ineigh, *ineighn, *jneigh, *jneighn, typei, typej, ni; int i, j, order1 = (ewald_order|(ewald_off^-1))&(1<<1); double qri, *cut_bucksqi, *buck1i, *buck2i, *rhoinvi; vector xi, d; ineighn = (ineigh = list->ilist_middle)+list->inum_middle; for (; ineighfirstneigh_middle[i])+list->numneigh_middle[i]; for (; jneigh= cut_out_off_sq) continue; if (rsq <= cut_in_off_sq) continue; r2inv = 1.0/rsq; r = sqrt(rsq); if (order1 && (rsq < cut_coulsq)) // coulombic force_coul = ni == 0 ? qri*q[j]/r : qri*q[j]/r*special_coul[ni]; if (rsq < cut_bucksqi[typej = type[j]]) { // buckingham double rn = r2inv*r2inv*r2inv, expr = exp(-r*rhoinvi[typej]); force_buck = ni == 0 ? (r*expr*buck1i[typej]-rn*buck2i[typej]) : (r*expr*buck1i[typej]-rn*buck2i[typej])*special_lj[ni]; } else force_buck = 0.0; fpair = (force_coul + force_buck) * r2inv; if (rsq < cut_in_on_sq) { // switching double rsw = (sqrt(rsq) - cut_in_off)/cut_in_diff; fpair *= rsw*rsw*(3.0 - 2.0*rsw); } if (rsq > cut_out_on_sq) { double rsw = (sqrt(rsq) - cut_out_on)/cut_out_diff; fpair *= 1.0 + rsw*rsw*(2.0*rsw-3.0); } if (newton_pair || j < nlocal) { // force update double *fj = f0+(j+(j<<1)), f; fi[0] += f = d[0]*fpair; fj[0] -= f; fi[1] += f = d[1]*fpair; fj[1] -= f; fi[2] += f = d[2]*fpair; fj[2] -= f; } else { fi[0] += d[0]*fpair; fi[1] += d[1]*fpair; fi[2] += d[2]*fpair; } } } } /* ---------------------------------------------------------------------- */ void PairBuckLongCoulLong::compute_outer(int eflag, int vflag) { double evdwl,ecoul,fpair,fvirial; evdwl = ecoul = 0.0; ev_init(eflag,vflag); double **x = atom->x, *x0 = x[0]; double **f = atom->f, *f0 = f[0], *fi = f0; double *q = atom->q; int *type = atom->type; int nlocal = atom->nlocal; double *special_coul = force->special_coul; double *special_lj = force->special_lj; int newton_pair = force->newton_pair; double qqrd2e = force->qqrd2e; int i, j, order1 = ewald_order&(1<<1), order6 = ewald_order&(1<<6); int *ineigh, *ineighn, *jneigh, *jneighn, typei, typej, ni, respa_flag; double qi = 0.0, qri = 0.0, *cutsqi, *cut_bucksqi, *buck1i, *buck2i, *buckai, *buckci, *rhoinvi, *offseti; double r, rsq, r2inv, force_coul, force_buck; double g2 = g_ewald_6*g_ewald_6, g6 = g2*g2*g2, g8 = g6*g2; double respa_buck = 0.0, respa_coul = 0.0, frespa = 0.0; vector xi, d; double cut_in_off = cut_respa[2]; double cut_in_on = cut_respa[3]; double cut_in_diff = cut_in_on - cut_in_off; double cut_in_off_sq = cut_in_off*cut_in_off; double cut_in_on_sq = cut_in_on*cut_in_on; ineighn = (ineigh = list->ilist)+list->inum; for (; ineighfirstneigh[i])+list->numneigh[i]; for (; jneigh= cutsqi[typej = type[j]]) continue; r2inv = 1.0/rsq; r = sqrt(rsq); frespa = 1.0; //check whether and how to compute respa corrections respa_coul = 0.0; respa_buck = 0.0; respa_flag = rsq < cut_in_on_sq ? 1 : 0; if (respa_flag && (rsq > cut_in_off_sq)) { double rsw = (r-cut_in_off)/cut_in_diff; frespa = 1-rsw*rsw*(3.0-2.0*rsw); } if (order1 && (rsq < cut_coulsq)) { // coulombic if (!ncoultablebits || rsq <= tabinnersq) { // series real space double s = qri*q[j]; if (respa_flag) // correct for respa respa_coul = ni == 0 ? frespa*s/r : frespa*s/r*special_coul[ni]; double x = g_ewald*r, t = 1.0/(1.0+EWALD_P*x); if (ni == 0) { s *= g_ewald*exp(-x*x); force_coul = (t *= ((((t*A5+A4)*t+A3)*t+A2)*t+A1)*s/x)+EWALD_F*s-respa_coul; if (eflag) ecoul = t; } else { // correct for special double ri = s*(1.0-special_coul[ni])/r; s *= g_ewald*exp(-x*x); force_coul = (t *= ((((t*A5+A4)*t+A3)*t+A2)*t+A1)*s/x)+EWALD_F*s-ri-respa_coul; if (eflag) ecoul = t-ri; } } // table real space else { if (respa_flag) { double s = qri*q[j]; respa_coul = ni == 0 ? frespa*s/r : frespa*s/r*special_coul[ni]; } union_int_float_t t; t.f = rsq; const int k = (t.i & ncoulmask) >> ncoulshiftbits; double f = (rsq-rtable[k])*drtable[k], qiqj = qi*q[j]; if (ni == 0) { force_coul = qiqj*(ftable[k]+f*dftable[k]); if (eflag) ecoul = qiqj*(etable[k]+f*detable[k]); } else { // correct for special t.f = (1.0-special_coul[ni])*(ctable[k]+f*dctable[k]); force_coul = qiqj*(ftable[k]+f*dftable[k]-t.f); if (eflag) { t.f = (1.0-special_coul[ni])*(ptable[k]+f*dptable[k]); ecoul = qiqj*(etable[k]+f*detable[k]-t.f); } } } } else force_coul = respa_coul = ecoul = 0.0; if (rsq < cut_bucksqi[typej]) { // buckingham double rn = r2inv*r2inv*r2inv, expr = exp(-r*rhoinvi[typej]); if (respa_flag) respa_buck = ni == 0 ? // correct for respa frespa*(r*expr*buck1i[typej]-rn*buck2i[typej]) : frespa*(r*expr*buck1i[typej]-rn*buck2i[typej])*special_lj[ni]; if (order6) { // long-range form if (!ndisptablebits || rsq <= tabinnerdispsq) { double x2 = g2*rsq, a2 = 1.0/x2; x2 = a2*exp(-x2)*buckci[typej]; if (ni == 0) { force_buck = r*expr*buck1i[typej]-g8*(((6.0*a2+6.0)*a2+3.0)*a2+1.0)*x2*rsq-respa_buck; if (eflag) evdwl = expr*buckai[typej]-g6*((a2+1.0)*a2+0.5)*x2; } else { // correct for special double f = special_lj[ni], t = rn*(1.0-f); force_buck = f*r*expr*buck1i[typej]- g8*(((6.0*a2+6.0)*a2+3.0)*a2+1.0)*x2*rsq+t*buck2i[typej]-respa_buck; if (eflag) evdwl = f*expr*buckai[typej] - g6*((a2+1.0)*a2+0.5)*x2+t*buckci[typej]; } } else { // table real space union_int_float_t disp_t; disp_t.f = rsq; const int disp_k = (disp_t.i & ndispmask)>>ndispshiftbits; double f_disp = (rsq-rdisptable[disp_k])*drdisptable[disp_k]; double rn = r2inv*r2inv*r2inv; if (ni == 0) { force_buck = r*expr*buck1i[typej]-(fdisptable[disp_k]+f_disp*dfdisptable[disp_k])*buckci[typej]-respa_buck; if (eflag) evdwl = expr*buckai[typej]-(edisptable[disp_k]+f_disp*dedisptable[disp_k])*buckci[typej]; } else { //special case double f = special_lj[ni], t = rn*(1.0-f); force_buck = f*r*expr*buck1i[typej]-(fdisptable[disp_k]+f_disp*dfdisptable[disp_k])*buckci[typej]+t*buck2i[typej]-respa_buck; if (eflag) evdwl = f*expr*buckai[typej]-(edisptable[disp_k]+f_disp*dedisptable[disp_k])*buckci[typej]+t*buckci[typej]; } } } else { // cut form if (ni == 0) { force_buck = r*expr*buck1i[typej]-rn*buck2i[typej]-respa_buck; if (eflag) evdwl = expr*buckai[typej]-rn*buckci[typej]-offseti[typej]; } else { // correct for special double f = special_lj[ni]; force_buck = f*(r*expr*buck1i[typej]-rn*buck2i[typej])-respa_buck; if (eflag) evdwl = f*(expr*buckai[typej]-rn*buckci[typej]-offseti[typej]); } } } else force_buck = respa_buck = evdwl = 0.0; fpair = (force_coul+force_buck)*r2inv; if (newton_pair || j < nlocal) { double *fj = f0+(j+(j<<1)), f; fi[0] += f = d[0]*fpair; fj[0] -= f; fi[1] += f = d[1]*fpair; fj[1] -= f; fi[2] += f = d[2]*fpair; fj[2] -= f; } else { fi[0] += d[0]*fpair; fi[1] += d[1]*fpair; fi[2] += d[2]*fpair; } if (evflag) { fvirial = (force_coul + force_buck + respa_coul + respa_buck)*r2inv; ev_tally(i,j,nlocal,newton_pair, evdwl,ecoul,fvirial,d[0],d[1],d[2]); } } } } /* ---------------------------------------------------------------------- */ double PairBuckLongCoulLong::single(int i, int j, int itype, int jtype, double rsq, double factor_coul, double factor_buck, double &fforce) { double f, r, r2inv, r6inv, force_coul, force_buck; double g2 = g_ewald_6*g_ewald_6, g6 = g2*g2*g2, g8 = g6*g2, *q = atom->q; r = sqrt(rsq); r2inv = 1.0/rsq; double eng = 0.0; if ((ewald_order&2) && (rsq < cut_coulsq)) { // coulombic if (!ncoultablebits || rsq <= tabinnersq) { // series real space double x = g_ewald*r; double s = force->qqrd2e*q[i]*q[j], t = 1.0/(1.0+EWALD_P*x); f = s*(1.0-factor_coul)/r; s *= g_ewald*exp(-x*x); force_coul = (t *= ((((t*A5+A4)*t+A3)*t+A2)*t+A1)*s/x)+EWALD_F*s-f; eng += t-f; } else { // table real space union_int_float_t t; t.f = rsq; const int k = (t.i & ncoulmask) >> ncoulshiftbits; double f = (rsq-rtable[k])*drtable[k], qiqj = q[i]*q[j]; t.f = (1.0-factor_coul)*(ctable[k]+f*dctable[k]); force_coul = qiqj*(ftable[k]+f*dftable[k]-t.f); eng += qiqj*(etable[k]+f*detable[k]-t.f); } } else force_coul = 0.0; if (rsq < cut_bucksq[itype][jtype]) { // buckingham double expr = factor_buck*exp(-sqrt(rsq)*rhoinv[itype][jtype]); r6inv = r2inv*r2inv*r2inv; if (ewald_order&64) { // long-range double x2 = g2*rsq, a2 = 1.0/x2, t = r6inv*(1.0-factor_buck); x2 = a2*exp(-x2)*buck_c[itype][jtype]; force_buck = buck1[itype][jtype]*r*expr- g8*(((6.0*a2+6.0)*a2+3.0)*a2+1.0)*x2*rsq+t*buck2[itype][jtype]; eng += buck_a[itype][jtype]*expr- g6*((a2+1.0)*a2+0.5)*x2+t*buck_c[itype][jtype]; } else { // cut force_buck = factor_buck*(buck1[itype][jtype]*r*expr-buck2[itype][jtype]*r6inv); eng += buck_a[itype][jtype]*expr- factor_buck*(buck_c[itype][jtype]*r6inv-offset[itype][jtype]); } } else force_buck = 0.0; fforce = (force_coul+force_buck)*r2inv; return eng; }