LAMMPS (10 Jan 2012) # 3d Lennard-Jones melt variable x index 1 variable y index 1 variable z index 1 variable xx equal 20*$x variable xx equal 20*1 variable yy equal 20*$y variable yy equal 20*1 variable zz equal 20*$z variable zz equal 20*1 units lj atom_style atomic lattice fcc 0.8442 Lattice spacing in x,y,z = 1.6796 1.6796 1.6796 region box block 0 ${xx} 0 ${yy} 0 ${zz} region box block 0 20 0 ${yy} 0 ${zz} region box block 0 20 0 20 0 ${zz} region box block 0 20 0 20 0 20 create_box 1 box Created orthogonal box = (0 0 0) to (33.5919 33.5919 33.5919) 1 by 2 by 2 MPI processor grid create_atoms 1 box Created 32000 atoms mass 1 1.0 velocity all create 1.44 87287 loop geom pair_style lj/cut 2.5 pair_coeff 1 1 1.0 1.0 2.5 neighbor 0.3 bin neigh_modify delay 0 every 20 check no fix 1 all nve run 100 Memory usage per processor = 4.31284 Mbytes Step Temp E_pair E_mol TotEng Press 0 1.44 -6.7733681 0 -4.6134356 -5.0197073 100 0.7574531 -5.7585055 0 -4.6223613 0.20726105 Loop time of 0.62139 on 4 procs for 100 steps with 32000 atoms Pair time (%) = 0.502622 (80.8866) Neigh time (%) = 0.0616071 (9.9144) Comm time (%) = 0.0411073 (6.61538) Outpt time (%) = 5.79953e-05 (0.00933316) Other time (%) = 0.0159961 (2.57424) Nlocal: 8000 ave 8037 max 7964 min Histogram: 2 0 0 0 0 0 0 0 1 1 Nghost: 9007.5 ave 9050 max 8968 min Histogram: 1 1 0 0 0 0 0 1 0 1 Neighs: 300708 ave 305113 max 297203 min Histogram: 1 0 0 1 1 0 0 0 0 1 Total # of neighbors = 1202833 Ave neighs/atom = 37.5885 Neighbor list builds = 5 Dangerous builds = 0