LAMMPS (29 Jan 2012) # 3d Lennard-Jones melt variable x index 1 variable y index 1 variable z index 1 variable xx equal 20*$x variable xx equal 20*1 variable yy equal 20*$y variable yy equal 20*1 variable zz equal 20*$z variable zz equal 20*1 units metal atom_style atomic newton off lattice fcc 4.4300 Lattice spacing in x,y,z = 4.43 4.43 4.43 region box block 0 ${xx} 0 ${yy} 0 ${zz} region box block 0 20 0 ${yy} 0 ${zz} region box block 0 20 0 20 0 ${zz} region box block 0 20 0 20 0 20 create_box 1 box Created orthogonal box = (0 0 0) to (88.6 88.6 88.6) 1 by 1 by 1 MPI processor grid create_atoms 1 box Created 32000 atoms #pair_style lj/cut 8.1500 #pair_coeff 1 1 0.0031 2.7400 #pair_modify shift yes pair_style kim model_Ne_P_LJ pair_coeff * * Ne mass 1 20.18 velocity all create 200.0 232345 loop geom neighbor 0.3 bin neigh_modify delay 5 every 1 check yes fix 1 all nve #fix 1 all npt temp 1.0 1.0 1.0 iso 1.0 1.0 3.0 run 100 Memory usage per processor = 19.615 Mbytes Step Temp E_pair E_mol TotEng Press 0 200 -741.55469 0 85.684388 -34.939092 100 108.37517 -362.56658 0 85.694308 3963.7892 Loop time of 13.6344 on 1 procs for 100 steps with 32000 atoms Pair time (%) = 12.988 (95.2588) Neigh time (%) = 0.556374 (4.08065) Comm time (%) = 0.0138693 (0.101722) Outpt time (%) = 0.000111103 (0.00081487) Other time (%) = 0.0760872 (0.558051) Nlocal: 32000 ave 32000 max 32000 min Histogram: 1 0 0 0 0 0 0 0 0 0 Nghost: 20131 ave 20131 max 20131 min Histogram: 1 0 0 0 0 0 0 0 0 0 Neighs: 2.09236e+06 ave 2.09236e+06 max 2.09236e+06 min Histogram: 1 0 0 0 0 0 0 0 0 0 Total # of neighbors = 2092355 Ave neighs/atom = 65.3861 Neighbor list builds = 5 Dangerous builds = 0