/* ---------------------------------------------------------------------- LAMMPS - Large-scale Atomic/Molecular Massively Parallel Simulator Original Version: http://lammps.sandia.gov, Sandia National Laboratories Steve Plimpton, sjplimp@sandia.gov See the README file in the top-level LAMMPS directory. ----------------------------------------------------------------------- USER-CUDA Package and associated modifications: https://sourceforge.net/projects/lammpscuda/ Christian Trott, christian.trott@tu-ilmenau.de Lars Winterfeld, lars.winterfeld@tu-ilmenau.de Theoretical Physics II, University of Technology Ilmenau, Germany See the README file in the USER-CUDA directory. This software is distributed under the GNU General Public License. ------------------------------------------------------------------------- */ #include #define MY_PREFIX fix_shake_cuda #include "cuda_shared.h" #include "cuda_common.h" #include "crm_cuda_utils.cu" #include "fix_shake_cuda_cu.h" #include "cuda_pair_virial_kernel_nc.cu" #define _shake_atom MY_AP(shake_atom) #define _shake_type MY_AP(shake_type) #define _shake_flag MY_AP(shake_flag) #define _xshake MY_AP(xshake) #define _dtfsq MY_AP(dtfsq) #define _bond_distance MY_AP(bond_distance) #define _angle_distance MY_AP(angle_distance) #define _max_iter MY_AP(max_iter) #define _tolerance MY_AP(tolerance) __device__ __constant__ int* _shake_atom; __device__ __constant__ int* _shake_type; __device__ __constant__ int* _shake_flag; __device__ __constant__ X_FLOAT3* _xshake; __device__ __constant__ F_FLOAT _dtfsq; __device__ __constant__ X_FLOAT* _bond_distance; __device__ __constant__ X_FLOAT* _angle_distance; __device__ __constant__ int _max_iter; __device__ __constant__ X_FLOAT _tolerance; #include "fix_shake_cuda_kernel.cu" void Cuda_FixShakeCuda_UpdateNmax(cuda_shared_data* sdata) { cudaMemcpyToSymbol(MY_CONST(x) , & sdata->atom.x .dev_data, sizeof(X_FLOAT*) ); cudaMemcpyToSymbol(MY_CONST(v) , & sdata->atom.v .dev_data, sizeof(V_FLOAT*) ); cudaMemcpyToSymbol(MY_CONST(f) , & sdata->atom.f .dev_data, sizeof(F_FLOAT*) ); cudaMemcpyToSymbol(MY_CONST(mask) , & sdata->atom.mask .dev_data, sizeof(int*) ); cudaMemcpyToSymbol(MY_CONST(tag) , & sdata->atom.tag .dev_data, sizeof(int*) ); cudaMemcpyToSymbol(MY_CONST(nlocal) , & sdata->atom.nlocal , sizeof(int) ); cudaMemcpyToSymbol(MY_CONST(nmax) , & sdata->atom.nmax , sizeof(int) ); cudaMemcpyToSymbol(MY_CONST(rmass) , & sdata->atom.rmass.dev_data, sizeof(V_FLOAT*) ); cudaMemcpyToSymbol(MY_CONST(type) , & sdata->atom.type .dev_data, sizeof(int*) ); cudaMemcpyToSymbol(MY_CONST(map_array), & sdata->atom.map_array .dev_data, sizeof(int*) ); cudaMemcpyToSymbol(MY_CONST(vatom) , & sdata->atom.vatom.dev_data, sizeof(ENERGY_FLOAT*) ); cudaMemcpyToSymbol(MY_CONST(debugdata), & sdata->debugdata , sizeof(int*) ); } void Cuda_FixShakeCuda_UpdateDomain(cuda_shared_data* sdata) { cudaMemcpyToSymbol(MY_CONST(periodicity), sdata->domain.periodicity , sizeof(int)*3 ); cudaMemcpyToSymbol(MY_CONST(prd) , sdata->domain.prd , sizeof(X_FLOAT)*3 ); cudaMemcpyToSymbol(MY_CONST(triclinic) , &sdata->domain.triclinic , sizeof(int) ); cudaMemcpyToSymbol(MY_CONST(h) , sdata->domain.h , sizeof(X_FLOAT)*6 ); } void Cuda_FixShakeCuda_UpdateBuffer(cuda_shared_data* sdata,int size) { if(sdata->buffersizebuffer,sdata->buffersize);) CudaWrapper_FreeCudaData(sdata->buffer,sdata->buffersize); sdata->buffer = CudaWrapper_AllocCudaData(size); sdata->buffersize=size; sdata->buffer_new++; MYDBG(printf("New buffer at %p with %i kB\n",sdata->buffer,sdata->buffersize);) } cudaMemcpyToSymbol(MY_CONST(buffer) , & sdata->buffer, sizeof(int*) ); } void Cuda_FixShakeCuda_Init(cuda_shared_data* sdata,X_FLOAT dtv, F_FLOAT dtfsq, void* shake_flag,void* shake_atom,void* shake_type, void* xshake, void* bond_distance,void* angle_distance,void* virial, int max_iter,X_FLOAT tolerance) { Cuda_FixShakeCuda_UpdateNmax(sdata); Cuda_FixShakeCuda_UpdateDomain(sdata); cudaMemcpyToSymbol(MY_CONST(shake_atom) , & shake_atom , sizeof(void*) ); cudaMemcpyToSymbol(MY_CONST(shake_type) , & shake_type , sizeof(void*) ); cudaMemcpyToSymbol(MY_CONST(shake_flag) , & shake_flag , sizeof(void*) ); cudaMemcpyToSymbol(MY_CONST(xshake) , & xshake , sizeof(void*) ); cudaMemcpyToSymbol(MY_CONST(dtv) , & dtv , sizeof(X_FLOAT)); cudaMemcpyToSymbol(MY_CONST(dtfsq) , & dtfsq , sizeof(F_FLOAT)); cudaMemcpyToSymbol(MY_CONST(bond_distance) , & bond_distance , sizeof(void*) ); cudaMemcpyToSymbol(MY_CONST(angle_distance) , & angle_distance , sizeof(void*) ); cudaMemcpyToSymbol(MY_CONST(virial) , & virial , sizeof(void*) ); cudaMemcpyToSymbol(MY_CONST(flag) , &sdata->flag , sizeof(int*) ); cudaMemcpyToSymbol(MY_CONST(max_iter) , &max_iter , sizeof(int) ); cudaMemcpyToSymbol(MY_CONST(tolerance) , &tolerance , sizeof(X_FLOAT)); if(sdata->atom.mass_host) cudaMemcpyToSymbol(MY_CONST(mass),& sdata->atom.mass.dev_data , sizeof(V_FLOAT*) ); cudaMemcpyToSymbol(MY_CONST(rmass_flag), & sdata->atom.rmass_flag , sizeof(int) ); // cudaMemcpyToSymbol(MY_CONST(flag) , &sdata->flag, sizeof(int*)); } void Cuda_FixShakeCuda_UnconstrainedUpdate(cuda_shared_data* sdata) { if(sdata->atom.update_nmax) Cuda_FixShakeCuda_UpdateNmax(sdata); if(sdata->atom.update_nlocal) cudaMemcpyToSymbol(MY_CONST(nlocal) , & sdata->atom.nlocal , sizeof(int)); if(sdata->buffer_new) Cuda_FixShakeCuda_UpdateBuffer(sdata,10*sizeof(double)); int3 layout=getgrid(sdata->atom.nlocal); dim3 threads(layout.z, 1, 1); dim3 grid(layout.x, layout.y, 1); FixShakeCuda_UnconstrainedUpdate_Kernel<<>> (); cudaThreadSynchronize(); CUT_CHECK_ERROR("FixShakeCuda_UnconstrainedUpdate: Kernel execution failed"); } void Cuda_FixShakeCuda_Shake(cuda_shared_data* sdata,int vflag,int vflag_atom,int* list,int nlist) { if(sdata->atom.update_nmax) Cuda_FixShakeCuda_UpdateNmax(sdata); if(sdata->domain.update) Cuda_FixShakeCuda_UpdateDomain(sdata); if(sdata->atom.update_nlocal) cudaMemcpyToSymbol(MY_CONST(nlocal) , & sdata->atom.nlocal , sizeof(int)); int3 layout=getgrid(sdata->atom.nlocal,6*sizeof(ENERGY_FLOAT),64); dim3 threads(layout.z, 1, 1); dim3 grid(layout.x, layout.y, 1); if(sdata->buffer_new) Cuda_FixShakeCuda_UpdateBuffer(sdata,grid.x*grid.y*6*sizeof(ENERGY_FLOAT)); BindXTypeTexture(sdata); FixShakeCuda_Shake_Kernel<<>> (vflag,vflag_atom,list,nlist); cudaThreadSynchronize(); CUT_CHECK_ERROR("FixShakeCuda_Shake: Kernel execution failed"); if(vflag) { int n=grid.x*grid.y; grid.x=6; grid.y=1; threads.x=256; MY_AP(PairVirialCompute_reduce)<<>>(n); cudaThreadSynchronize(); CUT_CHECK_ERROR("Cuda_FixShakeCuda: (no binning) virial compute Kernel execution failed"); } } int Cuda_FixShakeCuda_PackComm(cuda_shared_data* sdata,int n,int iswap,void* buf_send,int* pbc,int pbc_flag) { if(sdata->atom.update_nmax) Cuda_FixShakeCuda_UpdateNmax(sdata); if(sdata->atom.update_nlocal) cudaMemcpyToSymbol(MY_CONST(nlocal) , & sdata->atom.nlocal , sizeof(int) ); int size=n*3*sizeof(X_FLOAT); if(sdata->buffer_new or (size>sdata->buffersize)) Cuda_FixShakeCuda_UpdateBuffer(sdata,size); X_FLOAT dx=0.0; X_FLOAT dy=0.0; X_FLOAT dz=0.0; if (pbc_flag != 0) { if (sdata->domain.triclinic == 0) { dx = pbc[0]*sdata->domain.prd[0]; dy = pbc[1]*sdata->domain.prd[1]; dz = pbc[2]*sdata->domain.prd[2]; } else { dx = pbc[0]*sdata->domain.prd[0] + pbc[5]*sdata->domain.xy + pbc[4]*sdata->domain.xz; dy = pbc[1]*sdata->domain.prd[1] + pbc[3]*sdata->domain.yz; dz = pbc[2]*sdata->domain.prd[2]; }} int3 layout=getgrid(n); dim3 threads(layout.z, 1, 1); dim3 grid(layout.x, layout.y, 1); if(sdata->atom.nlocal>0) { cudaMemset( sdata->flag,0,sizeof(int)); FixShakeCuda_PackComm_Kernel<<>>((int*) sdata->comm.sendlist.dev_data,n,sdata->comm.maxlistlength,iswap,dx,dy,dz); cudaThreadSynchronize(); cudaMemcpy(buf_send, sdata->buffer, n*3*sizeof(X_FLOAT), cudaMemcpyDeviceToHost); int aflag; cudaMemcpy(&aflag, sdata->flag, sizeof(int), cudaMemcpyDeviceToHost); if(aflag!=0) printf("aflag PackComm: %i\n",aflag); CUT_CHECK_ERROR("Cuda_FixShakeCuda_PackComm: Kernel execution failed"); } return 3*n; } int Cuda_FixShakeCuda_PackComm_Self(cuda_shared_data* sdata,int n,int iswap,int first,int* pbc,int pbc_flag) { if(sdata->atom.update_nmax) Cuda_FixShakeCuda_UpdateNmax(sdata); if(sdata->atom.update_nlocal) cudaMemcpyToSymbol(MY_CONST(nlocal) , & sdata->atom.nlocal , sizeof(int) ); int size=n*3*sizeof(X_FLOAT); if(sdata->buffer_new or (size>sdata->buffersize)) Cuda_FixShakeCuda_UpdateBuffer(sdata,size); static int count=-1; count++; X_FLOAT dx=0.0; X_FLOAT dy=0.0; X_FLOAT dz=0.0; if (pbc_flag != 0) { if (sdata->domain.triclinic == 0) { dx = pbc[0]*sdata->domain.prd[0]; dy = pbc[1]*sdata->domain.prd[1]; dz = pbc[2]*sdata->domain.prd[2]; } else { dx = pbc[0]*sdata->domain.prd[0] + pbc[5]*sdata->domain.xy + pbc[4]*sdata->domain.xz; dy = pbc[1]*sdata->domain.prd[1] + pbc[3]*sdata->domain.yz; dz = pbc[2]*sdata->domain.prd[2]; }} int3 layout=getgrid(n); dim3 threads(layout.z, 1, 1); dim3 grid(layout.x, layout.y, 1); if(sdata->atom.nlocal>0) { FixShakeCuda_PackComm_Self_Kernel<<>>((int*) sdata->comm.sendlist.dev_data,n,sdata->comm.maxlistlength,iswap,dx,dy,dz,first); cudaThreadSynchronize(); CUT_CHECK_ERROR("Cuda_CommCuda_PackComm_Self: Kernel execution failed"); } return 3*n; } void Cuda_FixShakeCuda_UnpackComm(cuda_shared_data* sdata,int n,int first,void* buf_recv) { if(sdata->atom.update_nmax) Cuda_FixShakeCuda_UpdateNmax(sdata); if(sdata->atom.update_nlocal) cudaMemcpyToSymbol(MY_CONST(nlocal) , & sdata->atom.nlocal , sizeof(int) ); int size=n*3*sizeof(X_FLOAT); if(sdata->buffer_new or (size>sdata->buffersize)) Cuda_FixShakeCuda_UpdateBuffer(sdata,size); int3 layout=getgrid(n); dim3 threads(layout.z, 1, 1); dim3 grid(layout.x, layout.y, 1); if(sdata->atom.nlocal>0) { cudaMemcpy(sdata->buffer,(void*)buf_recv, n*3*sizeof(X_FLOAT), cudaMemcpyHostToDevice); FixShakeCuda_UnpackComm_Kernel<<>>(n,first); cudaThreadSynchronize(); CUT_CHECK_ERROR("Cuda_FixShakeCuda_UnpackComm: Kernel execution failed"); } }