LAMMPS (19 Sep 2019) OMP_NUM_THREADS environment is not set. Defaulting to 1 thread. (src/comm.cpp:93) using 1 OpenMP thread(s) per MPI task # H2O with NWChem variable mode index file if "${mode} == file" then "message client md file tmp.couple" elif "${mode} == zmq" "message client md zmq localhost:5555" message client md file tmp.couple units metal atom_style atomic atom_modify sort 0 0.0 map yes boundary m m m read_data data.h2o orthogonal box = (-10 -10 -10) to (10 10 10) 1 by 1 by 1 MPI processor grid reading atoms ... 3 atoms read_data CPU = 0.000627125 secs velocity all create 300.0 87287 loop geom neighbor 0.3 bin neigh_modify delay 0 every 10 check no fix 1 all nve fix 2 all client/md fix_modify 2 energy yes thermo 1 run 3 WARNING: Communication cutoff is 0.0. No ghost atoms will be generated. Atoms may get lost. (src/comm_brick.cpp:166) Per MPI rank memory allocation (min/avg/max) = 0.0276 | 0.0276 | 0.0276 Mbytes Step Temp E_pair E_mol TotEng Press Volume 0 300 0 0 0.077556087 10.354878 8000 1 300 0 0 0.077556087 10.354878 8000 2 300 0 0 0.077556087 10.354878 8000 3 300 0 0 0.077556087 10.354878 8000 Loop time of 0.30198 on 1 procs for 3 steps with 3 atoms Performance: 0.858 ns/day, 27.961 hours/ns, 9.934 timesteps/s 0.0% CPU use with 1 MPI tasks x 1 OpenMP threads MPI task timing breakdown: Section | min time | avg time | max time |%varavg| %total --------------------------------------------------------------- Pair | 0 | 0 | 0 | 0.0 | 0.00 Neigh | 0 | 0 | 0 | 0.0 | 0.00 Comm | 2.5979e-06 | 2.5979e-06 | 2.5979e-06 | 0.0 | 0.00 Output | 0.00012053 | 0.00012053 | 0.00012053 | 0.0 | 0.04 Modify | 0.30185 | 0.30185 | 0.30185 | 0.0 | 99.96 Other | | 8.211e-06 | | | 0.00 Nlocal: 3 ave 3 max 3 min Histogram: 1 0 0 0 0 0 0 0 0 0 Nghost: 0 ave 0 max 0 min Histogram: 1 0 0 0 0 0 0 0 0 0 Neighs: 0 ave 0 max 0 min Histogram: 1 0 0 0 0 0 0 0 0 0 Total # of neighbors = 0 Ave neighs/atom = 0 Neighbor list builds = 0 Dangerous builds not checked Total wall time: 0:00:07