units metal atom_style full processors * * 1 boundary p p f read_data ./bilayer_MoS2_AAprime_stacking.data mass * 32.065 # mass of sulphur atom , uint: a.u.=1.66X10^(-27)kg mass 1 95.94 # mass of molebdenum atom , uint: a.u.=1.66X10^(-27)kg mass 4 95.94 # Define potentials pair_style hybrid/overlay sw/mod sw/mod ilp/tmd 16.0 pair_coeff * * sw/mod 1 tmd.sw.mod Mo S S NULL NULL NULL pair_coeff * * sw/mod 2 tmd.sw.mod NULL NULL NULL Mo S S pair_coeff * * ilp/tmd TMD.ILP Mo S S Mo S S # Calculate the pair potential compute 0 all pair ilp/tmd compute 1 all pair sw/mod 1 compute 2 all pair sw/mod 2 variable SW1 equal c_1 variable SW2 equal c_2 variable ILP equal c_0 variable Eatt equal c_0[1] variable Erep equal c_0[2] thermo_style custom step etotal pe ke v_SW1 v_SW2 v_ILP v_Erep v_Eatt temp thermo 100 thermo_modify lost error timestep 1e-3 velocity all create 300.0 12345 fix intall all nve run 1000