/*************************************************************************** base_amoeba.h ------------------- Trung Dac Nguyen (Northwestern) Base class for pair styles needing per-particle data for position, charge, and type. __________________________________________________________________________ This file is part of the LAMMPS Accelerator Library (LAMMPS_AL) __________________________________________________________________________ begin : email : trung.nguyen@northwestern.edu ***************************************************************************/ #ifndef LAL_BASE_AMOEBA_H #define LAL_BASE_AMOEBA_H #include "lal_device.h" #include "lal_balance.h" #include "mpi.h" #if defined(USE_OPENCL) #include "geryon/ocl_texture.h" #elif defined(USE_CUDART) #include "geryon/nvc_texture.h" #elif defined(USE_HIP) #include "geryon/hip_texture.h" #else #include "geryon/nvd_texture.h" #endif namespace LAMMPS_AL { template class BaseAmoeba { public: BaseAmoeba(); virtual ~BaseAmoeba(); /// Clear any previous data and set up for a new LAMMPS run /** \param max_nbors initial number of rows in the neighbor matrix * \param cell_size cutoff + skin * \param gpu_split fraction of particles handled by device * \param k_name name for the kernel for force calculation * * Returns: * - 0 if successful * - -1 if fix gpu not found * - -3 if there is an out of memory error * - -4 if the GPU library was not compiled for GPU * - -5 Double precision is not supported on card **/ int init_atomic(const int nlocal, const int nall, const int max_nbors, const int maxspecial, const int maxspecial15, const double cell_size, const double gpu_split, FILE *screen, const void *pair_program, const char *kname_multipole, const char *kname_udirect2b, const char *kname_umutual2b, const char *kname_polar, const char *kname_short_nbor); /// Estimate the overhead for GPU context changes and CPU driver void estimate_gpu_overhead(const int add_kernels=0); /// Check if there is enough storage for atom arrays and realloc if not /** \param success set to false if insufficient memory **/ inline void resize_atom(const int inum, const int nall, bool &success) { if (atom->resize(nall, success)) { pos_tex.bind_float(atom->x,4); q_tex.bind_float(atom->q,1); } ans->resize(inum,success); } /// Check if there is enough storage for neighbors and realloc if not /** \param nlocal number of particles whose nbors must be stored on device * \param host_inum number of particles whose nbors need to copied to host * \param current maximum number of neighbors * \note olist_size=total number of local particles **/ inline void resize_local(const int inum, const int max_nbors, bool &success) { nbor->resize(inum,max_nbors,success); } /// Check if there is enough storage for neighbors and realloc if not /** \param nlocal number of particles whose nbors must be stored on device * \param host_inum number of particles whose nbors need to copied to host * \param current maximum number of neighbors * \note host_inum is 0 if the host is performing neighboring * \note nlocal+host_inum=total number local particles * \note olist_size=0 **/ inline void resize_local(const int inum, const int host_inum, const int max_nbors, bool &success) { nbor->resize(inum,host_inum,max_nbors,success); } /// Clear all host and device data /** \note This is called at the beginning of the init() routine **/ void clear_atomic(); /// Returns memory usage on device per atom int bytes_per_atom_atomic(const int max_nbors) const; /// Total host memory used by library for pair style double host_memory_usage_atomic() const; /// Accumulate timers inline void acc_timers() { if (device->time_device()) { nbor->acc_timers(screen); time_pair.add_to_total(); atom->acc_timers(); ans->acc_timers(); } } /// Zero timers inline void zero_timers() { time_pair.zero(); atom->zero_timers(); ans->zero_timers(); } /// Copy neighbor list from host int * reset_nbors(const int nall, const int inum, int *ilist, int *numj, int **firstneigh, bool &success); /// Build neighbor list on device int build_nbor_list(const int inum, const int host_inum, const int nall, double **host_x, int *host_type, double *sublo, double *subhi, tagint *tag, int **nspecial, tagint **special, int *nspecial15, tagint **special15, bool &success); /// Reallocate per-atom arrays if needed, and build neighbor lists once, if needed int** precompute(const int ago, const int inum_full, const int nall, double **host_x, int *host_type, int *host_amtype, int *host_amgroup, double **host_rpole, double **host_uind, double **host_uinp, double *sublo, double *subhi, tagint *tag, int **nspecial, tagint **special, int *nspecial15, tagint **special15, const bool eflag, const bool vflag, const bool eatom, const bool vatom, int &host_start, int **&ilist, int **&numj, const double cpu_time, bool &success, double *charge, double *boxlo, double *prd); /// Compute multipole real-space with device neighboring int** compute_multipole_real(const int ago, const int inum_full, const int nall, double **host_x, int *host_type, int *host_amtype, int *host_amgroup, double **host_rpole, double *sublo, double *subhi, tagint *tag, int **nspecial, tagint **special, int *nspecial15, tagint **special15, const bool eflag, const bool vflag, const bool eatom, const bool vatom, int &host_start, int **ilist, int **numj, const double cpu_time, bool &success, const double aewald, const double felec, const double off2_mpole, double *charge, double *boxlo, double *prd, void **tep_ptr); /// Compute the real space part of the permanent field (udirect2b) with device neighboring int** compute_udirect2b(const int ago, const int inum_full, const int nall, double **host_x, int *host_type, int *host_amtype, int *host_amgroup, double **host_rpole, double **host_uind, double **host_uinp, double *sublo, double *subhi, tagint *tag, int **nspecial, tagint **special, int *nspecial15, tagint **special15, const bool eflag, const bool vflag, const bool eatom, const bool vatom, int &host_start, int **ilist, int **numj, const double cpu_time, bool &success, const double aewald, const double off2_polar, double *charge, double *boxlo, double *prd, void **fieldp_ptr); /// Compute the real space part of the induced field (umutual2b) with device neighboring int** compute_umutual2b(const int ago, const int inum_full, const int nall, double **host_x, int *host_type, int *host_amtype, int *host_amgroup, double **host_rpole, double **host_uind, double **host_uinp, double *sublo, double *subhi, tagint *tag, int **nspecial, tagint **special, int *nspecial15, tagint **special15, const bool eflag, const bool vflag, const bool eatom, const bool vatom, int &host_start, int **ilist, int **numj, const double cpu_time, bool &success, const double aewald, const double off2_polar, double *charge, double *boxlo, double *prd, void **fieldp_ptr); /// Compute polar real-space with device neighboring int** compute_polar_real(const int ago, const int inum_full, const int nall, double **host_x, int *host_type, int *host_amtype, int *host_amgroup, double **host_rpole, double **host_uind, double **host_uinp, double *sublo, double *subhi, tagint *tag, int **nspecial, tagint **special, int *nspecial15, tagint **special15, const bool eflag, const bool vflag, const bool eatom, const bool vatom, int &host_start, int **ilist, int **numj, const double cpu_time, bool &success, const double aewald, const double felec, const double off2_polar, double *charge, double *boxlo, double *prd, void **tep_ptr); /// Compute polar real-space with host neighboring (not active for now) void compute_polar_real_host_nbor(const int f_ago, const int inum_full, const int nall, double **host_x, int *host_type, int *host_amtype, int *host_amgroup, double **host_rpole, double **host_uind, double **host_uinp, int *ilist, int *numj, int **firstneigh, const bool eflag, const bool vflag, const bool eatom, const bool vatom, int &host_start, const double cpu_time, bool &success, const double aewald, const double felec, const double off2_polar, double *charge, const int nlocal, double *boxlo, double *prd, void **tep_ptr); // -------------------------- DEVICE DATA ------------------------- /// Device Properties and Atom and Neighbor storage Device *device; /// Geryon device UCL_Device *ucl_device; /// Device Timers UCL_Timer time_pair; /// Host device load balancer Balance hd_balancer; /// LAMMPS pointer for screen output FILE *screen; // --------------------------- ATOM DATA -------------------------- /// Atom Data Atom *atom; UCL_Vector polar1, polar2, polar3, polar4, polar5; /// cast host arrays into a single array for atom->extra void cast_extra_data(int* amtype, int* amgroup, double** rpole, double** uind, double** uinp); /// Per-atom arrays UCL_Vector _tep, _fieldp; int _nmax, _max_tep_size, _max_fieldp_size; // ------------------------ FORCE/ENERGY DATA ----------------------- Answer *ans; // --------------------------- NBOR DATA ---------------------------- /// Neighbor data Neighbor *nbor; /// Device storage for 1-5 special neighbor counts UCL_D_Vec dev_nspecial15; /// Device storage for special neighbors UCL_D_Vec dev_special15, dev_special15_t; int add_onefive_neighbors(); UCL_D_Vec dev_short_nbor; // ------------------------- DEVICE KERNELS ------------------------- UCL_Program *pair_program; UCL_Kernel k_multipole, k_udirect2b, k_umutual2b, k_polar, k_special15; UCL_Kernel k_short_nbor; inline int block_size() { return _block_size; } inline void set_kernel(const int eflag, const int vflag) {} // --------------------------- TEXTURES ----------------------------- UCL_Texture pos_tex; UCL_Texture q_tex; protected: bool _compiled; int _block_size, _block_bio_size, _threads_per_atom; int _extra_fields; double _max_bytes, _max_an_bytes, _maxspecial, _maxspecial15, _max_nbors; double _gpu_overhead, _driver_overhead; bool short_nbor_polar_avail; UCL_D_Vec *_nbor_data; numtyp _aewald,_felec; numtyp _off2_hal,_off2_repulse,_off2_dispersion,_off2_mpole,_off2_polar; void compile_kernels(UCL_Device &dev, const void *pair_string, const char *kname_multipole, const char *kname_udirect2b, const char *kname_umutual2b, const char *kname_polar, const char *kname_short_nbor); virtual int multipole_real(const int eflag, const int vflag) = 0; virtual int udirect2b(const int eflag, const int vflag) = 0; virtual int umutual2b(const int eflag, const int vflag) = 0; virtual int polar_real(const int eflag, const int vflag) = 0; }; } #endif