#!/usr/bin/env python3 # Utility for detecting and fixing file permission issues in LAMMPS # # Written by Richard Berger (Temple University) from __future__ import print_function import sys if sys.version_info.major < 3: sys.exit('This script must be run with Python 3.5 or later') if sys.version_info.minor < 5: sys.exit('This script must be run with Python 3.5 or later') import os import glob import yaml import argparse import stat DEFAULT_CONFIG = """ recursive: true include: - cmake/** - doc/src/** - python - src/** - examples/** - tools/coding_standard patterns: - "*.c" - "*.cmake" - "*.cpp" - "*.h" - "*.jpg" - "*.md" - "*.pdf" - "*.png" - "*.rst" - "*.tex" - ".gitignore" - "README" - "in.*" - "requirements.txt" """ def has_executable_bit(path): st = os.stat(path) return bool(st.st_mode & (stat.S_IXUSR | stat.S_IXGRP | stat.S_IXOTH)) def get_non_exec_mask(path): st = os.stat(path) return st.st_mode & ~(stat.S_IXUSR | stat.S_IXGRP | stat.S_IXOTH) def check_folder(directory, config, fix=False, verbose=False): success = True files = [] for base_path in config['include']: for pattern in config['patterns']: path = os.path.join(directory, base_path, pattern) files += glob.glob(path, recursive=config['recursive']) for f in files: path = os.path.normpath(f) if verbose: print("Checking file:", path) if has_executable_bit(path): print("[Error] Wrong file permissions @ {}".format(path)) if fix: if os.access(path, os.W_OK): print("Removing executable bit of file {}".format(path)) new_mask = get_non_exec_mask(path) os.chmod(path, new_mask) else: print("[Error] Can not write permissions of file {}".format(path)) success = False else: success = False return success def main(): parser = argparse.ArgumentParser(description='Utility for detecting and fixing file permission issues in LAMMPS') parser.add_argument('-c', '--config', metavar='CONFIG_FILE', help='location of a optional configuration file') parser.add_argument('-f', '--fix', action='store_true', help='automatically fix permissions') parser.add_argument('-v', '--verbose', action='store_true', help='verbose output') parser.add_argument('DIRECTORY', help='directory that should be checked') args = parser.parse_args() lammpsdir = os.path.abspath(os.path.expanduser(args.DIRECTORY)) if args.config: with open(args.config, 'r') as cfile: config = yaml.load(cfile, Loader=yaml.FullLoader) else: config = yaml.load(DEFAULT_CONFIG, Loader=yaml.FullLoader) if not check_folder(lammpsdir, config, args.fix, args.verbose): sys.exit(1) if __name__ == "__main__": main()