/* ---------------------------------------------------------------------- LAMMPS - Large-scale Atomic/Molecular Massively Parallel Simulator Original Version: http://lammps.sandia.gov, Sandia National Laboratories Steve Plimpton, sjplimp@sandia.gov See the README file in the top-level LAMMPS directory. ----------------------------------------------------------------------- USER-CUDA Package and associated modifications: https://sourceforge.net/projects/lammpscuda/ Christian Trott, christian.trott@tu-ilmenau.de Lars Winterfeld, lars.winterfeld@tu-ilmenau.de Theoretical Physics II, University of Technology Ilmenau, Germany See the README file in the USER-CUDA directory. This software is distributed under the GNU General Public License. ------------------------------------------------------------------------- */ #include #define MY_PREFIX fix_shake_cuda #include "cuda_shared.h" #include "cuda_common.h" #include "crm_cuda_utils.cu" #include "fix_shake_cuda_cu.h" #include "cuda_pair_virial_kernel_nc.cu" #define _shake_atom MY_AP(shake_atom) #define _shake_type MY_AP(shake_type) #define _shake_flag MY_AP(shake_flag) #define _xshake MY_AP(xshake) #define _dtfsq MY_AP(dtfsq) #define _bond_distance MY_AP(bond_distance) #define _angle_distance MY_AP(angle_distance) #define _max_iter MY_AP(max_iter) #define _tolerance MY_AP(tolerance) __device__ __constant__ int* _shake_atom; __device__ __constant__ int* _shake_type; __device__ __constant__ int* _shake_flag; __device__ __constant__ X_CFLOAT3* _xshake; __device__ __constant__ F_CFLOAT _dtfsq; __device__ __constant__ X_CFLOAT* _bond_distance; __device__ __constant__ X_CFLOAT* _angle_distance; __device__ __constant__ int _max_iter; __device__ __constant__ X_CFLOAT _tolerance; #include "fix_shake_cuda_kernel.cu" void Cuda_FixShakeCuda_UpdateNmax(cuda_shared_data* sdata) { cudaMemcpyToSymbol(MY_AP(x) , & sdata->atom.x .dev_data, sizeof(X_CFLOAT*)); cudaMemcpyToSymbol(MY_AP(v) , & sdata->atom.v .dev_data, sizeof(V_CFLOAT*)); cudaMemcpyToSymbol(MY_AP(f) , & sdata->atom.f .dev_data, sizeof(F_CFLOAT*)); cudaMemcpyToSymbol(MY_AP(mask) , & sdata->atom.mask .dev_data, sizeof(int*)); cudaMemcpyToSymbol(MY_AP(tag) , & sdata->atom.tag .dev_data, sizeof(int*)); cudaMemcpyToSymbol(MY_AP(nlocal) , & sdata->atom.nlocal , sizeof(int)); cudaMemcpyToSymbol(MY_AP(nmax) , & sdata->atom.nmax , sizeof(int)); cudaMemcpyToSymbol(MY_AP(rmass) , & sdata->atom.rmass.dev_data, sizeof(V_CFLOAT*)); cudaMemcpyToSymbol(MY_AP(type) , & sdata->atom.type .dev_data, sizeof(int*)); cudaMemcpyToSymbol(MY_AP(map_array), & sdata->atom.map_array .dev_data, sizeof(int*)); cudaMemcpyToSymbol(MY_AP(vatom) , & sdata->atom.vatom.dev_data, sizeof(ENERGY_CFLOAT*)); cudaMemcpyToSymbol(MY_AP(debugdata), & sdata->debugdata , sizeof(int*)); } void Cuda_FixShakeCuda_UpdateDomain(cuda_shared_data* sdata) { cudaMemcpyToSymbol(MY_AP(periodicity), sdata->domain.periodicity , sizeof(int) * 3); cudaMemcpyToSymbol(MY_AP(prd) , sdata->domain.prd , sizeof(X_CFLOAT) * 3); cudaMemcpyToSymbol(MY_AP(triclinic) , &sdata->domain.triclinic , sizeof(int)); cudaMemcpyToSymbol(MY_AP(h) , sdata->domain.h , sizeof(X_CFLOAT) * 6); } void Cuda_FixShakeCuda_UpdateBuffer(cuda_shared_data* sdata, int size) { if(sdata->buffersize < size) { MYDBG(printf("Cuda_FixShakeCuda Resizing Buffer at %p with %i kB to\n", sdata->buffer, sdata->buffersize);) CudaWrapper_FreeCudaData(sdata->buffer, sdata->buffersize); sdata->buffer = CudaWrapper_AllocCudaData(size); sdata->buffersize = size; sdata->buffer_new++; MYDBG(printf("New buffer at %p with %i kB\n", sdata->buffer, sdata->buffersize);) } cudaMemcpyToSymbol(MY_AP(buffer) , & sdata->buffer, sizeof(int*)); } void Cuda_FixShakeCuda_Init(cuda_shared_data* sdata, X_CFLOAT dtv, F_CFLOAT dtfsq, void* shake_flag, void* shake_atom, void* shake_type, void* xshake, void* bond_distance, void* angle_distance, void* virial, int max_iter, X_CFLOAT tolerance) { Cuda_FixShakeCuda_UpdateNmax(sdata); Cuda_FixShakeCuda_UpdateDomain(sdata); cudaMemcpyToSymbol(MY_AP(shake_atom) , & shake_atom , sizeof(void*)); cudaMemcpyToSymbol(MY_AP(shake_type) , & shake_type , sizeof(void*)); cudaMemcpyToSymbol(MY_AP(shake_flag) , & shake_flag , sizeof(void*)); cudaMemcpyToSymbol(MY_AP(xshake) , & xshake , sizeof(void*)); cudaMemcpyToSymbol(MY_AP(dtv) , & dtv , sizeof(X_CFLOAT)); cudaMemcpyToSymbol(MY_AP(dtfsq) , & dtfsq , sizeof(F_CFLOAT)); cudaMemcpyToSymbol(MY_AP(bond_distance) , & bond_distance , sizeof(void*)); cudaMemcpyToSymbol(MY_AP(angle_distance) , & angle_distance , sizeof(void*)); cudaMemcpyToSymbol(MY_AP(virial) , & virial , sizeof(void*)); cudaMemcpyToSymbol(MY_AP(flag) , &sdata->flag , sizeof(int*)); cudaMemcpyToSymbol(MY_AP(max_iter) , &max_iter , sizeof(int)); cudaMemcpyToSymbol(MY_AP(tolerance) , &tolerance , sizeof(X_CFLOAT)); if(sdata->atom.mass_host) cudaMemcpyToSymbol(MY_AP(mass), & sdata->atom.mass.dev_data , sizeof(V_CFLOAT*)); cudaMemcpyToSymbol(MY_AP(rmass_flag), & sdata->atom.rmass_flag , sizeof(int)); // cudaMemcpyToSymbol(MY_AP(flag) , &sdata->flag, sizeof(int*)); } void Cuda_FixShakeCuda_UnconstrainedUpdate(cuda_shared_data* sdata) { if(sdata->atom.update_nmax) Cuda_FixShakeCuda_UpdateNmax(sdata); if(sdata->atom.update_nlocal) cudaMemcpyToSymbol(MY_AP(nlocal) , & sdata->atom.nlocal , sizeof(int)); if(sdata->buffer_new) Cuda_FixShakeCuda_UpdateBuffer(sdata, 10 * sizeof(double)); int3 layout = getgrid(sdata->atom.nlocal); dim3 threads(layout.z, 1, 1); dim3 grid(layout.x, layout.y, 1); FixShakeCuda_UnconstrainedUpdate_Kernel <<< grid, threads>>> (); cudaThreadSynchronize(); CUT_CHECK_ERROR("FixShakeCuda_UnconstrainedUpdate: Kernel execution failed"); } void Cuda_FixShakeCuda_Shake(cuda_shared_data* sdata, int vflag, int vflag_atom, int* list, int nlist) { if(sdata->atom.update_nmax) Cuda_FixShakeCuda_UpdateNmax(sdata); if(sdata->domain.update) Cuda_FixShakeCuda_UpdateDomain(sdata); if(sdata->atom.update_nlocal) cudaMemcpyToSymbol(MY_AP(nlocal) , & sdata->atom.nlocal , sizeof(int)); int3 layout = getgrid(sdata->atom.nlocal, 6 * sizeof(ENERGY_CFLOAT), 64); dim3 threads(layout.z, 1, 1); dim3 grid(layout.x, layout.y, 1); if(sdata->buffer_new) Cuda_FixShakeCuda_UpdateBuffer(sdata, grid.x * grid.y * 6 * sizeof(ENERGY_CFLOAT)); BindXTypeTexture(sdata); FixShakeCuda_Shake_Kernel <<< grid, threads, 6* threads.x* sizeof(ENERGY_CFLOAT)>>> (vflag, vflag_atom, list, nlist); cudaThreadSynchronize(); CUT_CHECK_ERROR("FixShakeCuda_Shake: Kernel execution failed"); if(vflag) { int n = grid.x * grid.y; grid.x = 6; grid.y = 1; threads.x = 256; MY_AP(PairVirialCompute_reduce) <<< grid, threads, threads.x* sizeof(ENERGY_CFLOAT)>>>(n); cudaThreadSynchronize(); CUT_CHECK_ERROR("Cuda_FixShakeCuda: (no binning) virial compute Kernel execution failed"); } } int Cuda_FixShakeCuda_PackComm(cuda_shared_data* sdata, int n, int iswap, void* buf_send, int* pbc, int pbc_flag) { if(sdata->atom.update_nmax) Cuda_FixShakeCuda_UpdateNmax(sdata); if(sdata->atom.update_nlocal) cudaMemcpyToSymbol(MY_AP(nlocal) , & sdata->atom.nlocal , sizeof(int)); int size = n * 3 * sizeof(X_CFLOAT); if(sdata->buffer_new or (size > sdata->buffersize)) Cuda_FixShakeCuda_UpdateBuffer(sdata, size); X_CFLOAT dx = 0.0; X_CFLOAT dy = 0.0; X_CFLOAT dz = 0.0; if(pbc_flag != 0) { if(sdata->domain.triclinic == 0) { dx = pbc[0] * sdata->domain.prd[0]; dy = pbc[1] * sdata->domain.prd[1]; dz = pbc[2] * sdata->domain.prd[2]; } else { dx = pbc[0] * sdata->domain.prd[0] + pbc[5] * sdata->domain.xy + pbc[4] * sdata->domain.xz; dy = pbc[1] * sdata->domain.prd[1] + pbc[3] * sdata->domain.yz; dz = pbc[2] * sdata->domain.prd[2]; } } int3 layout = getgrid(n); dim3 threads(layout.z, 1, 1); dim3 grid(layout.x, layout.y, 1); if(sdata->atom.nlocal > 0) { cudaMemset(sdata->flag, 0, sizeof(int)); FixShakeCuda_PackComm_Kernel <<< grid, threads, 0>>>((int*) sdata->comm.sendlist.dev_data, n, sdata->comm.maxlistlength, iswap, dx, dy, dz); cudaThreadSynchronize(); cudaMemcpy(buf_send, sdata->buffer, n * 3 * sizeof(X_CFLOAT), cudaMemcpyDeviceToHost); int aflag; cudaMemcpy(&aflag, sdata->flag, sizeof(int), cudaMemcpyDeviceToHost); if(aflag != 0) printf("aflag PackComm: %i\n", aflag); CUT_CHECK_ERROR("Cuda_FixShakeCuda_PackComm: Kernel execution failed"); } return 3 * n; } int Cuda_FixShakeCuda_PackComm_Self(cuda_shared_data* sdata, int n, int iswap, int first, int* pbc, int pbc_flag) { if(sdata->atom.update_nmax) Cuda_FixShakeCuda_UpdateNmax(sdata); if(sdata->atom.update_nlocal) cudaMemcpyToSymbol(MY_AP(nlocal) , & sdata->atom.nlocal , sizeof(int)); int size = n * 3 * sizeof(X_CFLOAT); if(sdata->buffer_new or (size > sdata->buffersize)) Cuda_FixShakeCuda_UpdateBuffer(sdata, size); static int count = -1; count++; X_CFLOAT dx = 0.0; X_CFLOAT dy = 0.0; X_CFLOAT dz = 0.0; if(pbc_flag != 0) { if(sdata->domain.triclinic == 0) { dx = pbc[0] * sdata->domain.prd[0]; dy = pbc[1] * sdata->domain.prd[1]; dz = pbc[2] * sdata->domain.prd[2]; } else { dx = pbc[0] * sdata->domain.prd[0] + pbc[5] * sdata->domain.xy + pbc[4] * sdata->domain.xz; dy = pbc[1] * sdata->domain.prd[1] + pbc[3] * sdata->domain.yz; dz = pbc[2] * sdata->domain.prd[2]; } } int3 layout = getgrid(n); dim3 threads(layout.z, 1, 1); dim3 grid(layout.x, layout.y, 1); if(sdata->atom.nlocal > 0) { FixShakeCuda_PackComm_Self_Kernel <<< grid, threads, 0>>>((int*) sdata->comm.sendlist.dev_data, n, sdata->comm.maxlistlength, iswap, dx, dy, dz, first); cudaThreadSynchronize(); CUT_CHECK_ERROR("Cuda_CommCuda_PackComm_Self: Kernel execution failed"); } return 3 * n; } void Cuda_FixShakeCuda_UnpackComm(cuda_shared_data* sdata, int n, int first, void* buf_recv) { if(sdata->atom.update_nmax) Cuda_FixShakeCuda_UpdateNmax(sdata); if(sdata->atom.update_nlocal) cudaMemcpyToSymbol(MY_AP(nlocal) , & sdata->atom.nlocal , sizeof(int)); int size = n * 3 * sizeof(X_CFLOAT); if(sdata->buffer_new or (size > sdata->buffersize)) Cuda_FixShakeCuda_UpdateBuffer(sdata, size); int3 layout = getgrid(n); dim3 threads(layout.z, 1, 1); dim3 grid(layout.x, layout.y, 1); if(sdata->atom.nlocal > 0) { cudaMemcpy(sdata->buffer, (void*)buf_recv, n * 3 * sizeof(X_CFLOAT), cudaMemcpyHostToDevice); FixShakeCuda_UnpackComm_Kernel <<< grid, threads, 0>>>(n, first); cudaThreadSynchronize(); CUT_CHECK_ERROR("Cuda_FixShakeCuda_UnpackComm: Kernel execution failed"); } }