/* ---------------------------------------------------------------------- LAMMPS - Large-scale Atomic/Molecular Massively Parallel Simulator http://lammps.sandia.gov, Sandia National Laboratories Steve Plimpton, sjplimp@sandia.gov Copyright (2003) Sandia Corporation. Under the terms of Contract DE-AC04-94AL85000 with Sandia Corporation, the U.S. Government retains certain rights in this software. This software is distributed under the GNU General Public License. See the README file in the top-level LAMMPS directory. ------------------------------------------------------------------------- */ #include "fix_manifoldforce.h" // For stuff #include #include #include "atom.h" #include "update.h" #include "respa.h" #include "error.h" #include "force.h" #include "manifold.h" #include "manifold_factory.h" // For constructing manifold using namespace LAMMPS_NS; using namespace FixConst; using namespace user_manifold; // Helper functions for parameters/equal style variables in input script static bool was_var( const char *arg ) { return strstr( arg, "v_" ) == arg; } static bool str_eq( const char *str1, const char *str2 ) { return strcmp(str1,str2) == 0; } /* ---------------------------------------------------------------------- */ FixManifoldForce::FixManifoldForce(LAMMPS *lmp, int narg, char **arg) : Fix(lmp, narg, arg) { int me = -1; MPI_Comm_rank(world,&me); // Command is given as // fix manifoldforce manifold_name manifold_args if (narg < 5) { error->all(FLERR,"Illegal fix manifoldforce! No manifold given"); } const char *m_name = arg[3]; ptr_m = create_manifold(m_name,lmp,narg,arg); // Construct manifold from factory: if (!ptr_m) { char msg[2048]; snprintf(msg,2048,"Manifold pointer for manifold '%s' was NULL for some reason", arg[3]); error->all(FLERR,msg); } // After constructing the manifold, you can safely make // room for the parameters nvars = ptr_m->nparams(); if (narg < nvars+4) { char msg[2048]; sprintf(msg,"Manifold %s needs at least %d argument(s)!", m_name, nvars); error->all(FLERR,msg); } ptr_m->params = new double[nvars]; if (ptr_m->params == NULL) { error->all(FLERR,"Parameter pointer was NULL!"); } // This part here stores the names/text of each argument, // determines which params are equal-style variables, // and sets the values of those arguments that were _not_ // equal style vars (so that they are not overwritten each time step). double *params = ptr_m->params; for( int i = 0; i < nvars; ++i ){ if (was_var( arg[i+4] )) error->all(FLERR,"Equal-style variables not allowed with fix manifoldforce"); // Use force->numeric to trigger an error if arg is not a number. params[i] = force->numeric(FLERR,arg[i+4]); } // Perform any further initialization for the manifold that depends on params: ptr_m->post_param_init(); } /* ---------------------------------------------------------------------- */ int FixManifoldForce::setmask() { int mask = 0; mask |= POST_FORCE; mask |= POST_FORCE_RESPA; mask |= MIN_POST_FORCE; return mask; } /* ---------------------------------------------------------------------- */ void FixManifoldForce::init() { // Check the min-style: const bool is_good_min_style = str_eq(update->minimize_style,"hftn") || str_eq(update->minimize_style,"quickmin"); if (!is_good_min_style) { error->all(FLERR,"Fix manifoldforce requires min_style hftn or quickmin"); } } /* ---------------------------------------------------------------------- */ void FixManifoldForce::setup(int vflag) { if (strstr(update->integrate_style,"verlet")) post_force(vflag); else { int nlevels_respa = ((Respa *) update->integrate)->nlevels; for (int ilevel = 0; ilevel < nlevels_respa; ilevel++) { ((Respa *) update->integrate)->copy_flevel_f(ilevel); post_force_respa(vflag,ilevel,0); ((Respa *) update->integrate)->copy_f_flevel(ilevel); } } } /* ---------------------------------------------------------------------- */ void FixManifoldForce::min_setup(int vflag) { post_force(vflag); } /* ---------------------------------------------------------------------- */ void FixManifoldForce::post_force(int /*vflag*/) { double **x = atom->x; double **f = atom->f; int *mask = atom->mask; int nlocal = atom->nlocal; double n[3]; double invn2; double dot; for (int i = 0; i < nlocal; i++){ if (mask[i] & groupbit) { // Determine normal of particle: ptr_m->n(x[i],n); invn2 = 1.0 / ( n[0]*n[0] + n[1]*n[1] + n[2]*n[2] ); dot = f[i][0]*n[0] + f[i][1]*n[1] + f[i][2]*n[2]; f[i][0] -= dot*n[0] * invn2; f[i][1] -= dot*n[1] * invn2; f[i][2] -= dot*n[2] * invn2; } } } /* ---------------------------------------------------------------------- */ void FixManifoldForce::post_force_respa(int vflag, int /*ilevel*/, int /*iloop*/) { post_force(vflag); } /* ---------------------------------------------------------------------- */ void FixManifoldForce::min_post_force(int vflag) { post_force(vflag); }