from __future__ import print_function class LAMMPSLJCutPotential(object): def __init__(self): self.pmap=dict() # set coeffs: eps, sig, 48*eps*sig**12, 24*eps*sig**6, # 4*eps*sig**12, 4*eps*sig**6 self.coeff = {'lj' : {'lj' : (1.0,1.0,48.0,24.0,4.0,4.0), 'NULL': (0.0,1.0, 0.0, 0.0,0.0,0.0)}, 'NULL': {'lj' : (0.0,1.0, 0.0, 0.0,0.0,0.0), 'NULL': (0.0,1.0, 0.0, 0.0,0.0,0.0)}} def map_coeff(self,name,type): if self.coeff.has_key(name): self.pmap[type] = name else: raise Exception("cannot match atom type %s" % name) def compute_force(self,rsq,itype,jtype): r2inv = 1.0/rsq r6inv = r2inv*r2inv*r2inv lj1 = self.coeff[self.pmap[itype]][self.pmap[jtype]][2] lj2 = self.coeff[self.pmap[itype]][self.pmap[jtype]][3] return (r6inv * (lj1*r6inv - lj2)) def compute_energy(self,rsq,itype,jtype): r2inv = 1.0/rsq r6inv = r2inv*r2inv*r2inv lj3 = self.coeff[self.pmap[itype]][self.pmap[jtype]][4] lj4 = self.coeff[self.pmap[itype]][self.pmap[jtype]][5] return (r6inv * (lj3*r6inv - lj4)) lammps_pair_style = LAMMPSLJCutPotential()