# Solvated 5-mer peptide units real dimension 3 atom_style angle # read topology and force field read_data data.pegc12e8 include parm.pegc12e8 neighbor 2.0 bin neigh_modify delay 5 timestep 5.0 dump 1 all xtc 200 pegc12e8-1.xtc dump_modify 1 unwrap yes #dump 2 all dcd 200 pegc12e8-1.dcd unwrap #dump_modify 2 unwrap yes velocity all create 303.0 46659 mom yes rot yes dist gaussian fix 1 all nvt 303.0 303.0 100.0 thermo_style multi thermo 200 run 1000 write_restart pegc12e8-1.restart