/* ---------------------------------------------------------------------- LAMMPS - Large-scale Atomic/Molecular Massively Parallel Simulator https://www.lammps.org/, Sandia National Laboratories LAMMPS development team: developers@lammps.org Copyright (2003) Sandia Corporation. Under the terms of Contract DE-AC04-94AL85000 with Sandia Corporation, the U.S. Government retains certain rights in this software. This software is distributed under the GNU General Public License. See the README file in the top-level LAMMPS directory. ------------------------------------------------------------------------- */ /* ---------------------------------------------------------------------- Contributing author: Carsten Svaneborg (SDU) ------------------------------------------------------------------------- */ #include "pair_zero2.h" #include "atom.h" #include "comm.h" #include "error.h" #include "memory.h" #include using namespace LAMMPS_NS; /* ---------------------------------------------------------------------- */ PairZero2::PairZero2(LAMMPS *lmp) : Pair(lmp) { coeffflag = 1; writedata = 1; single_enable = 1; respa_enable = 1; } /* ---------------------------------------------------------------------- */ PairZero2::~PairZero2() { if (allocated) { memory->destroy(setflag); memory->destroy(cutsq); memory->destroy(cut); } } /* ---------------------------------------------------------------------- */ void PairZero2::compute(int eflag, int vflag) { ev_init(eflag, vflag); if (vflag_fdotr) virial_fdotr_compute(); } /* ---------------------------------------------------------------------- */ void PairZero2::compute_outer(int eflag, int vflag) { ev_init(eflag, vflag); } /* ---------------------------------------------------------------------- allocate all arrays ------------------------------------------------------------------------- */ void PairZero2::allocate() { allocated = 1; int n = atom->ntypes; memory->create(setflag, n + 1, n + 1, "pair:setflag"); for (int i = 1; i <= n; i++) for (int j = i; j <= n; j++) setflag[i][j] = 0; memory->create(cutsq, n + 1, n + 1, "pair:cutsq"); memory->create(cut, n + 1, n + 1, "pair:cut"); } /* ---------------------------------------------------------------------- global settings ------------------------------------------------------------------------- */ void PairZero2::settings(int narg, char **arg) { if ((narg != 1) && (narg != 2)) error->all(FLERR, "Illegal pair_style command"); cut_global = utils::numeric(FLERR, arg[0], false, lmp); if (narg == 2) { if (strcmp("nocoeff", arg[1]) == 0) coeffflag = 0; else error->all(FLERR, "Illegal pair_style command"); } // reset cutoffs that have been explicitly set if (allocated) { int i, j; for (i = 1; i <= atom->ntypes; i++) for (j = i + 1; j <= atom->ntypes; j++) cut[i][j] = cut_global; } } /* ---------------------------------------------------------------------- set coeffs for one or more type pairs ------------------------------------------------------------------------- */ void PairZero2::coeff(int narg, char **arg) { if ((narg < 2) || (coeffflag && narg > 3)) error->all(FLERR, "Incorrect args for pair coefficients"); if (!allocated) allocate(); int ilo, ihi, jlo, jhi; utils::bounds(FLERR, arg[0], 1, atom->ntypes, ilo, ihi, error); utils::bounds(FLERR, arg[1], 1, atom->ntypes, jlo, jhi, error); double cut_one = cut_global; if (coeffflag && (narg == 3)) cut_one = utils::numeric(FLERR, arg[2], false, lmp); int count = 0; for (int i = ilo; i <= ihi; i++) { for (int j = MAX(jlo, i); j <= jhi; j++) { cut[i][j] = cut_one; setflag[i][j] = 1; count++; } } if (count == 0) error->all(FLERR, "Incorrect args for pair coefficients"); } /* ---------------------------------------------------------------------- init for one type pair i,j and corresponding j,i ------------------------------------------------------------------------- */ double PairZero2::init_one(int i, int j) { if (setflag[i][j] == 0) { cut[i][j] = mix_distance(cut[i][i], cut[j][j]); } return cut[i][j]; } /* ---------------------------------------------------------------------- proc 0 writes to restart file ------------------------------------------------------------------------- */ void PairZero2::write_restart(FILE *fp) { write_restart_settings(fp); int i, j; for (i = 1; i <= atom->ntypes; i++) for (j = i; j <= atom->ntypes; j++) { fwrite(&setflag[i][j], sizeof(int), 1, fp); if (setflag[i][j]) { fwrite(&cut[i][j], sizeof(double), 1, fp); } } } /* ---------------------------------------------------------------------- proc 0 reads from restart file, bcasts ------------------------------------------------------------------------- */ void PairZero2::read_restart(FILE *fp) { read_restart_settings(fp); allocate(); int i, j; int me = comm->me; for (i = 1; i <= atom->ntypes; i++) for (j = i; j <= atom->ntypes; j++) { if (me == 0) utils::sfread(FLERR, &setflag[i][j], sizeof(int), 1, fp, nullptr, error); MPI_Bcast(&setflag[i][j], 1, MPI_INT, 0, world); if (setflag[i][j]) { if (me == 0) { utils::sfread(FLERR, &cut[i][j], sizeof(double), 1, fp, nullptr, error); } MPI_Bcast(&cut[i][j], 1, MPI_DOUBLE, 0, world); } } } /* ---------------------------------------------------------------------- proc 0 writes to restart file ------------------------------------------------------------------------- */ void PairZero2::write_restart_settings(FILE *fp) { fwrite(&cut_global, sizeof(double), 1, fp); fwrite(&coeffflag, sizeof(int), 1, fp); } /* ---------------------------------------------------------------------- proc 0 reads from restart file, bcasts ------------------------------------------------------------------------- */ void PairZero2::read_restart_settings(FILE *fp) { int me = comm->me; if (me == 0) { utils::sfread(FLERR, &cut_global, sizeof(double), 1, fp, nullptr, error); utils::sfread(FLERR, &coeffflag, sizeof(int), 1, fp, nullptr, error); } MPI_Bcast(&cut_global, 1, MPI_DOUBLE, 0, world); MPI_Bcast(&coeffflag, 1, MPI_INT, 0, world); } /* ---------------------------------------------------------------------- proc 0 writes to data file ------------------------------------------------------------------------- */ void PairZero2::write_data(FILE *fp) { for (int i = 1; i <= atom->ntypes; i++) fprintf(fp, "%d\n", i); } /* ---------------------------------------------------------------------- proc 0 writes all pairs to data file ------------------------------------------------------------------------- */ void PairZero2::write_data_all(FILE *fp) { for (int i = 1; i <= atom->ntypes; i++) for (int j = i; j <= atom->ntypes; j++) fprintf(fp, "%d %d %g\n", i, j, cut[i][j]); } /* ---------------------------------------------------------------------- */ double PairZero2::single(int /*i*/, int /*j*/, int /* itype */, int /* jtype */, double /* rsq */, double /*factor_coul*/, double /* factor_lj */, double &fforce) { fforce = 0.0; return 0.0; }