dimension 3 boundary p p p atom_style ellipsoid variable L equal 20 region total block -$L $L -$L $L -$L $L lattice sc 0.1 create_box 2 total create_atoms 1 box # Set random fraction to passive: set type 1 type/fraction 2 0.5 1337 # Purely repulsive particles: variable rc equal "2^(1.0/6.0)" pair_style lj/cut ${rc} pair_coeff * * 1.0 1.0 pair_modify shift yes # mass * 1.0 set type * shape 1.0 1.0 1.0 set type * density 1.9098593171027443 set type * quat 0 0 1 0 fix step all nve/asphere fix temp all langevin 1.0 1.0 1.0 13 angmom 3.333333333 neighbor 0.6 bin dump traj all custom 100 3d_active.dump.bin id type x y z fx fy fz thermo_style custom step pe ke etotal temp thermo 100 run 500 fix active all propel/self quat 1.0 # With active force there is more motion so increase bin size: neighbor 1.0 bin run 500