/* ---------------------------------------------------------------------- LAMMPS - Large-scale Atomic/Molecular Massively Parallel Simulator http://lammps.sandia.gov, Sandia National Laboratories Steve Plimpton, sjplimp@sandia.gov Copyright (2003) Sandia Corporation. Under the terms of Contract DE-AC04-94AL85000 with Sandia Corporation, the U.S. Government retains certain rights in this software. This software is distributed under the GNU General Public License. See the README file in the top-level LAMMPS directory. ------------------------------------------------------------------------- */ /* ---------------------------------------------------------------------- Contributing author: Christina Payne (Vanderbilt U) ------------------------------------------------------------------------- */ #include "math.h" #include "string.h" #include "stdlib.h" #include "fix_efield.h" #include "atom.h" #include "update.h" #include "modify.h" #include "force.h" #include "respa.h" #include "input.h" #include "variable.h" #include "memory.h" #include "error.h" using namespace LAMMPS_NS; using namespace FixConst; enum{CONSTANT,EQUAL,ATOM}; /* ---------------------------------------------------------------------- */ FixEfield::FixEfield(LAMMPS *lmp, int narg, char **arg) : Fix(lmp, narg, arg) { if (narg != 6) error->all(FLERR,"Illegal fix efield command"); qe2f = force->qe2f; xstr = ystr = zstr = NULL; if (strstr(arg[3],"v_") == arg[3]) { int n = strlen(&arg[3][2]) + 1; xstr = new char[n]; strcpy(xstr,&arg[3][2]); } else { ex = qe2f * atof(arg[3]); xstyle = CONSTANT; } if (strstr(arg[4],"v_") == arg[4]) { int n = strlen(&arg[4][2]) + 1; ystr = new char[n]; strcpy(ystr,&arg[4][2]); } else { ey = qe2f * atof(arg[4]); ystyle = CONSTANT; } if (strstr(arg[5],"v_") == arg[5]) { int n = strlen(&arg[5][2]) + 1; zstr = new char[n]; strcpy(zstr,&arg[5][2]); } else { ez = qe2f * atof(arg[5]); zstyle = CONSTANT; } maxatom = 0; efield = NULL; } /* ---------------------------------------------------------------------- */ FixEfield::~FixEfield() { delete [] xstr; delete [] ystr; delete [] zstr; memory->destroy(efield); } /* ---------------------------------------------------------------------- */ int FixEfield::setmask() { int mask = 0; mask |= POST_FORCE; mask |= POST_FORCE_RESPA; return mask; } /* ---------------------------------------------------------------------- */ void FixEfield::init() { if (!atom->q_flag) error->all(FLERR,"Fix efield requires atom attribute q"); // check variables if (xstr) { xvar = input->variable->find(xstr); if (xvar < 0) error->all(FLERR, "Variable name for fix efield does not exist"); if (input->variable->equalstyle(xvar)) xstyle = EQUAL; else if (input->variable->atomstyle(xvar)) xstyle = ATOM; else error->all(FLERR,"Variable for fix efield is invalid style"); } if (ystr) { yvar = input->variable->find(ystr); if (yvar < 0) error->all(FLERR, "Variable name for fix efield does not exist"); if (input->variable->equalstyle(yvar)) ystyle = EQUAL; else if (input->variable->atomstyle(yvar)) ystyle = ATOM; else error->all(FLERR,"Variable for fix efield is invalid style"); } if (zstr) { zvar = input->variable->find(zstr); if (zvar < 0) error->all(FLERR, "Variable name for fix efield does not exist"); if (input->variable->equalstyle(zvar)) zstyle = EQUAL; else if (input->variable->atomstyle(zvar)) zstyle = ATOM; else error->all(FLERR,"Variable for fix efield is invalid style"); } if (xstyle == ATOM || ystyle == ATOM || zstyle == ATOM) varflag = ATOM; else if (xstyle == EQUAL || ystyle == EQUAL || zstyle == EQUAL) varflag = EQUAL; else varflag = CONSTANT; if (strstr(update->integrate_style,"respa")) nlevels_respa = ((Respa *) update->integrate)->nlevels; } /* ---------------------------------------------------------------------- */ void FixEfield::setup(int vflag) { if (strstr(update->integrate_style,"verlet")) post_force(vflag); else { ((Respa *) update->integrate)->copy_flevel_f(nlevels_respa-1); post_force_respa(vflag,nlevels_respa-1,0); ((Respa *) update->integrate)->copy_f_flevel(nlevels_respa-1); } } /* ---------------------------------------------------------------------- apply F = qE ------------------------------------------------------------------------- */ void FixEfield::post_force(int vflag) { double **f = atom->f; double *q = atom->q; int *mask = atom->mask; int nlocal = atom->nlocal; // reallocate efield array if necessary if (varflag == ATOM && nlocal > maxatom) { maxatom = atom->nmax; memory->destroy(efield); memory->create(efield,maxatom,3,"efield:efield"); } if (varflag == CONSTANT) { for (int i = 0; i < nlocal; i++) if (mask[i] & groupbit) { f[i][0] += q[i]*ex; f[i][1] += q[i]*ey; f[i][2] += q[i]*ez; } // variable efield, wrap with clear/add } else { modify->clearstep_compute(); if (xstyle == EQUAL) ex = qe2f * input->variable->compute_equal(xvar); else if (xstyle == ATOM && efield) input->variable->compute_atom(xvar,igroup,&efield[0][0],3,0); if (ystyle == EQUAL) ey = qe2f * input->variable->compute_equal(yvar); else if (ystyle == ATOM && efield) input->variable->compute_atom(yvar,igroup,&efield[0][1],3,0); if (zstyle == EQUAL) ez = qe2f * input->variable->compute_equal(zvar); else if (zstyle == ATOM && efield) input->variable->compute_atom(zvar,igroup,&efield[0][2],3,0); modify->addstep_compute(update->ntimestep + 1); for (int i = 0; i < nlocal; i++) if (mask[i] & groupbit) { if (xstyle == ATOM) f[i][0] += qe2f * q[i]*efield[i][0]; else f[i][0] += q[i]*ex; if (ystyle == ATOM) f[i][1] += qe2f * q[i]*efield[i][1]; else f[i][1] += q[i]*ey; if (zstyle == ATOM) f[i][2] += qe2f * q[i]*efield[i][2]; else f[i][2] += q[i]*ez; } } } /* ---------------------------------------------------------------------- */ void FixEfield::post_force_respa(int vflag, int ilevel, int iloop) { if (ilevel == nlevels_respa-1) post_force(vflag); } /* ---------------------------------------------------------------------- memory usage of local atom-based array ------------------------------------------------------------------------- */ double FixEfield::memory_usage() { double bytes = 0.0; if (varflag == ATOM) bytes = atom->nmax*3 * sizeof(double); return bytes; }