// -*- c++ -*- // This file is part of the Collective Variables module (Colvars). // The original version of Colvars and its updates are located at: // https://github.com/Colvars/colvars // Please update all Colvars source files before making any changes. // If you wish to distribute your changes, please submit them to the // Colvars repository at GitHub. #include #include "colvarmodule.h" #include "colvarvalue.h" #include "colvarparse.h" #include "colvar.h" #include "colvarcomp.h" colvar::alch_lambda::alch_lambda(std::string const &conf) : cvc(conf) { set_function_type("alchLambda"); disable(f_cvc_explicit_gradient); disable(f_cvc_gradient); x.type(colvarvalue::type_scalar); // Query initial value from back-end cvm::proxy->get_alch_lambda(&x.real_value); } void colvar::alch_lambda::calc_value() { // Special workflow: // at the beginning of the timestep we get a force instead of calculating the value cvm::proxy->get_dE_dlambda(&ft.real_value); ft.real_value *= -1.0; // Energy derivative to force // Include any force due to bias on Flambda ft.real_value += cvm::proxy->indirect_lambda_biasing_force; cvm::proxy->indirect_lambda_biasing_force = 0.0; } void colvar::alch_lambda::calc_gradients() { } void colvar::alch_lambda::apply_force(colvarvalue const & /* force */) { // new value will be cached and sent at end of timestep cvm::proxy->set_alch_lambda(x.real_value); } simple_scalar_dist_functions(alch_lambda) colvar::alch_Flambda::alch_Flambda(std::string const &conf) : cvc(conf) { set_function_type("alch_Flambda"); disable(f_cvc_explicit_gradient); disable(f_cvc_gradient); x.type(colvarvalue::type_scalar); } void colvar::alch_Flambda::calc_value() { // Special workflow: // at the beginning of the timestep we get a force instead of calculating the value // Query initial value from back-end cvm::proxy->get_dE_dlambda(&x.real_value); x.real_value *= -1.0; // Energy derivative to force } void colvar::alch_Flambda::calc_gradients() { } void colvar::alch_Flambda::apply_force(colvarvalue const &force) { // Convert force on Flambda to force on dE/dlambda cvm::real f = -1.0 * force.real_value; // Send scalar force to back-end, which will distribute it onto atoms cvm::proxy->apply_force_dE_dlambda(&f); // Propagate force on Flambda to lambda internally cvm::real d2E_dlambda2; cvm::proxy->get_d2E_dlambda2(&d2E_dlambda2); // This accumulates a force, it needs to be zeroed when taken into account by lambda cvm::proxy->indirect_lambda_biasing_force += d2E_dlambda2 * f; } simple_scalar_dist_functions(alch_Flambda)