/* ---------------------------------------------------------------------- LAMMPS - Large-scale Atomic/Molecular Massively Parallel Simulator http://lammps.sandia.gov, Sandia National Laboratories Steve Plimpton, sjplimp@sandia.gov Copyright (2003) Sandia Corporation. Under the terms of Contract DE-AC04-94AL85000 with Sandia Corporation, the U.S. Government retains certain rights in this software. This software is distributed under the GNU General Public License. See the README file in the top-level LAMMPS directory. ------------------------------------------------------------------------- */ #include #include "utils.h" #include "error.h" /*! \file utils.cpp */ /* * Mini regex-module adapted from https://github.com/kokke/tiny-regex-c * which is in the public domain. * * Supports: * --------- * '.' Dot, matches any character * '^' Start anchor, matches beginning of string * '$' End anchor, matches end of string * '*' Asterisk, match zero or more (greedy) * '+' Plus, match one or more (greedy) * '?' Question, match zero or one (non-greedy) * '[abc]' Character class, match if one of {'a', 'b', 'c'} * '[a-zA-Z]' Character ranges, the character set of the ranges { a-z | A-Z } * '\s' Whitespace, \t \f \r \n \v and spaces * '\S' Non-whitespace * '\w' Alphanumeric, [a-zA-Z0-9_] * '\W' Non-alphanumeric * '\d' Digits, [0-9] * '\D' Non-digits * * *NOT* supported: * '[^abc]' Inverted class * 'a|b' Branches * '(abc)+' Groups */ extern "C" { /** Match text against a (simplified) regular expression * (regexp will be compiled automatically). */ static int re_match(const char *text, const char *pattern); } using namespace LAMMPS_NS; /** More flexible and specific matching of a string against a pattern. * This function is supposed to be a more safe, more specific and * simple to use API to find pattern matches. The purpose is to replace * uses of either strncmp() or strstr() in the code base to find * substrings safely. With strncmp() finding prefixes, the number of * characters to match must be counted, which can lead to errors, * while using "^pattern" will do the same with less problems. * Matching for suffixes using strstr() is not as specific as 'pattern$', * and complex matches, e.g. "^rigid.*\/small.*", to match all small * body optimized rigid fixes require only one test. * * The use of std::string arguments allows for simple concatenation * even with char * type variables. * Example: utils::strmatch(text, std::string("^") + charptr) */ bool utils::strmatch(std::string text, std::string pattern) { const int pos = re_match(text.c_str(),pattern.c_str()); return (pos >= 0); } /* utility function to avoid code repetition when parsing args */ int utils::cfvarg(std::string mode, const char *arg, char *&cfv_id) { int rv = utils::NONE; cfv_id = NULL; if (!arg) return rv; if (utils::strmatch(arg,std::string("^[") + mode + "]_")) { if (*arg == 'c') rv = utils::COMPUTE; else if (*arg == 'f') rv = utils::FIX; else if (*arg == 'v') rv = utils::VARIABLE; else return rv; // should not happen arg += 2; int n = strlen(arg)+1; cfv_id = new char[n]; strcpy(cfv_id,arg); } return rv; } /* like fgets() but aborts with an error or EOF is encountered */ void utils::sfgets(char* srcname, int srcline, char *s, int size, FILE *fp, std::string filename, Error *error) { char *rv = fgets(s,size,fp); if (rv == NULL) { // something went wrong std::string errmsg; if (feof(fp)) { errmsg = "Unexpected end of file while reading file '"; } else if (ferror(fp)) { errmsg = "Unexpected error while reading file '"; } else { errmsg = "Unexpected short read while reading file '"; } errmsg += filename + "'"; if (error) error->one(srcname,srcline,errmsg.c_str()); if (s) *s = '\0'; // truncate string to empty in case error is NULL } return; } /* ------------------------------------------------------------------ */ extern "C" { /* Typedef'd pointer to get abstract datatype. */ typedef struct regex_t *re_t; /* Compile regex string pattern to a regex_t-array. */ static re_t re_compile(const char *pattern); /* Find matches of the compiled pattern inside text. */ static int re_matchp(const char *text, re_t pattern); /* Definitions: */ #define MAX_REGEXP_OBJECTS 30 /* Max number of regex symbols in expression. */ #define MAX_CHAR_CLASS_LEN 40 /* Max length of character-class buffer in. */ enum { UNUSED, DOT, BEGIN, END, QUESTIONMARK, STAR, PLUS, CHAR, CHAR_CLASS, INV_CHAR_CLASS, DIGIT, NOT_DIGIT, ALPHA, NOT_ALPHA, WHITESPACE, NOT_WHITESPACE /*, BRANCH */ }; typedef struct regex_t { unsigned char type; /* CHAR, STAR, etc. */ union { unsigned char ch; /* the character itself */ unsigned char *ccl; /* OR a pointer to characters in class */ }; } regex_t; /* Private function declarations: */ static int matchpattern(regex_t *pattern, const char *text); static int matchcharclass(char c, const char *str); static int matchstar(regex_t p, regex_t *pattern, const char *text); static int matchplus(regex_t p, regex_t *pattern, const char *text); static int matchone(regex_t p, char c); static int matchdigit(char c); static int matchalpha(char c); static int matchwhitespace(char c); static int matchmetachar(char c, const char *str); static int matchrange(char c, const char *str); static int ismetachar(char c); /* Semi-public functions: */ int re_match(const char *text, const char *pattern) { return re_matchp(text, re_compile(pattern)); } int re_matchp(const char *text, re_t pattern) { if (pattern != 0) { if (pattern[0].type == BEGIN) { return ((matchpattern(&pattern[1], text)) ? 0 : -1); } else { int idx = -1; do { idx += 1; if (matchpattern(pattern, text)) { if (text[0] == '\0') return -1; return idx; } } while (*text++ != '\0'); } } return -1; } re_t re_compile(const char *pattern) { /* The sizes of the two static arrays below substantiates the static RAM usage of this module. MAX_REGEXP_OBJECTS is the max number of symbols in the expression. MAX_CHAR_CLASS_LEN determines the size of buffer for chars in all char-classes in the expression. */ static regex_t re_compiled[MAX_REGEXP_OBJECTS]; static unsigned char ccl_buf[MAX_CHAR_CLASS_LEN]; int ccl_bufidx = 1; char c; /* current char in pattern */ int i = 0; /* index into pattern */ int j = 0; /* index into re_compiled */ while (pattern[i] != '\0' && (j+1 < MAX_REGEXP_OBJECTS)) { c = pattern[i]; switch (c) { /* Meta-characters: */ case '^': { re_compiled[j].type = BEGIN; } break; case '$': { re_compiled[j].type = END; } break; case '.': { re_compiled[j].type = DOT; } break; case '*': { re_compiled[j].type = STAR; } break; case '+': { re_compiled[j].type = PLUS; } break; case '?': { re_compiled[j].type = QUESTIONMARK; } break; /* Escaped character-classes (\s \w ...): */ case '\\': { if (pattern[i+1] != '\0') { /* Skip the escape-char '\\' */ i += 1; /* ... and check the next */ switch (pattern[i]) { /* Meta-character: */ case 'd': { re_compiled[j].type = DIGIT; } break; case 'D': { re_compiled[j].type = NOT_DIGIT; } break; case 'w': { re_compiled[j].type = ALPHA; } break; case 'W': { re_compiled[j].type = NOT_ALPHA; } break; case 's': { re_compiled[j].type = WHITESPACE; } break; case 'S': { re_compiled[j].type = NOT_WHITESPACE; } break; /* Escaped character, e.g. '.' or '$' */ default: { re_compiled[j].type = CHAR; re_compiled[j].ch = pattern[i]; } break; } } /* '\\' as last char in pattern -> invalid regular expression. */ } break; /* Character class: */ case '[': { /* Remember where the char-buffer starts. */ int buf_begin = ccl_bufidx; /* Look-ahead to determine if negated */ if (pattern[i+1] == '^') { re_compiled[j].type = INV_CHAR_CLASS; i += 1; /* Increment i to avoid including '^' in the char-buffer */ } else { re_compiled[j].type = CHAR_CLASS; } /* Copy characters inside [..] to buffer */ while ((pattern[++i] != ']') && (pattern[i] != '\0')) { /* Missing ] */ if (pattern[i] == '\\') { if (ccl_bufidx >= MAX_CHAR_CLASS_LEN - 1) { return 0; } ccl_buf[ccl_bufidx++] = pattern[i++]; } else if (ccl_bufidx >= MAX_CHAR_CLASS_LEN) { return 0; } ccl_buf[ccl_bufidx++] = pattern[i]; } if (ccl_bufidx >= MAX_CHAR_CLASS_LEN) { /* Catches cases such as [00000000000000000000000000000000000000][ */ return 0; } /* Null-terminate string end */ ccl_buf[ccl_bufidx++] = 0; re_compiled[j].ccl = &ccl_buf[buf_begin]; } break; /* Other characters: */ default: { re_compiled[j].type = CHAR; re_compiled[j].ch = c; } break; } i += 1; j += 1; } /* 'UNUSED' is a sentinel used to indicate end-of-pattern */ re_compiled[j].type = UNUSED; return (re_t) re_compiled; } /* Private functions: */ static int matchdigit(char c) { return ((c >= '0') && (c <= '9')); } static int matchalpha(char c) { return ((c >= 'a') && (c <= 'z')) || ((c >= 'A') && (c <= 'Z')); } static int matchwhitespace(char c) { return ((c == ' ') || (c == '\t') || (c == '\n') || (c == '\r') || (c == '\f') || (c == '\v')); } static int matchalphanum(char c) { return ((c == '_') || matchalpha(c) || matchdigit(c)); } static int matchrange(char c, const char *str) { return ((c != '-') && (str[0] != '\0') && (str[0] != '-') && (str[1] == '-') && (str[1] != '\0') && (str[2] != '\0') && ((c >= str[0]) && (c <= str[2]))); } static int ismetachar(char c) { return ((c == 's') || (c == 'S') || (c == 'w') || (c == 'W') || (c == 'd') || (c == 'D')); } static int matchmetachar(char c, const char *str) { switch (str[0]) { case 'd': return matchdigit(c); case 'D': return !matchdigit(c); case 'w': return matchalphanum(c); case 'W': return !matchalphanum(c); case 's': return matchwhitespace(c); case 'S': return !matchwhitespace(c); default: return (c == str[0]); } } static int matchcharclass(char c, const char *str) { do { if (matchrange(c, str)) { return 1; } else if (str[0] == '\\') { /* Escape-char: increment str-ptr and match on next char */ str += 1; if (matchmetachar(c, str)) { return 1; } else if ((c == str[0]) && !ismetachar(c)) { return 1; } } else if (c == str[0]) { if (c == '-') { return ((str[-1] == '\0') || (str[1] == '\0')); } else { return 1; } } } while (*str++ != '\0'); return 0; } static int matchone(regex_t p, char c) { switch (p.type) { case DOT: return 1; case CHAR_CLASS: return matchcharclass(c, (const char *)p.ccl); case INV_CHAR_CLASS: return !matchcharclass(c, (const char *)p.ccl); case DIGIT: return matchdigit(c); case NOT_DIGIT: return !matchdigit(c); case ALPHA: return matchalphanum(c); case NOT_ALPHA: return !matchalphanum(c); case WHITESPACE: return matchwhitespace(c); case NOT_WHITESPACE: return !matchwhitespace(c); default: return (p.ch == c); } } static int matchstar(regex_t p, regex_t *pattern, const char *text) { do { if (matchpattern(pattern, text)) return 1; } while ((text[0] != '\0') && matchone(p, *text++)); return 0; } static int matchplus(regex_t p, regex_t *pattern, const char *text) { while ((text[0] != '\0') && matchone(p, *text++)) { if (matchpattern(pattern, text)) return 1; } return 0; } static int matchquestion(regex_t p, regex_t *pattern, const char *text) { if (p.type == UNUSED) return 1; if (matchpattern(pattern, text)) return 1; if (*text && matchone(p, *text++)) return matchpattern(pattern, text); return 0; } /* Iterative matching */ static int matchpattern(regex_t *pattern, const char *text) { do { if ((pattern[0].type == UNUSED) || (pattern[1].type == QUESTIONMARK)) { return matchquestion(pattern[0], &pattern[2], text); } else if (pattern[1].type == STAR) { return matchstar(pattern[0], &pattern[2], text); } else if (pattern[1].type == PLUS) { return matchplus(pattern[0], &pattern[2], text); } else if ((pattern[0].type == END) && pattern[1].type == UNUSED) { return (text[0] == '\0'); } } while ((text[0] != '\0') && matchone(*pattern++, *text++)); return 0; } }