/* ---------------------------------------------------------------------- LAMMPS - Large-scale Atomic/Molecular Massively Parallel Simulator https://www.lammps.org/, Sandia National Laboratories LAMMPS development team: developers@lammps.org Copyright (2003) Sandia Corporation. Under the terms of Contract DE-AC04-94AL85000 with Sandia Corporation, the U.S. Government retains certain rights in this software. This software is distributed under the GNU General Public License. See the README file in the top-level LAMMPS directory. ------------------------------------------------------------------------- */ #include "pair_lj_class2_coul_long.h" #include "atom.h" #include "comm.h" #include "error.h" #include "force.h" #include "kspace.h" #include "math_const.h" #include "memory.h" #include "neigh_list.h" #include "neighbor.h" #include "respa.h" #include "update.h" #include #include using namespace LAMMPS_NS; using namespace MathConst; static constexpr double EWALD_F = 1.12837917; static constexpr double EWALD_P = 0.3275911; static constexpr double A1 = 0.254829592; static constexpr double A2 = -0.284496736; static constexpr double A3 = 1.421413741; static constexpr double A4 = -1.453152027; static constexpr double A5 = 1.061405429; /* ---------------------------------------------------------------------- */ PairLJClass2CoulLong::PairLJClass2CoulLong(LAMMPS *lmp) : Pair(lmp) { ewaldflag = pppmflag = 1; respa_enable = 1; writedata = 1; ftable = nullptr; cut_respa = nullptr; } /* ---------------------------------------------------------------------- */ PairLJClass2CoulLong::~PairLJClass2CoulLong() { if (copymode) return; if (allocated) { memory->destroy(setflag); memory->destroy(cutsq); memory->destroy(cut_lj); memory->destroy(cut_ljsq); memory->destroy(epsilon); memory->destroy(sigma); memory->destroy(lj1); memory->destroy(lj2); memory->destroy(lj3); memory->destroy(lj4); memory->destroy(offset); } if (ftable) free_tables(); } /* ---------------------------------------------------------------------- */ void PairLJClass2CoulLong::compute(int eflag, int vflag) { int i, j, ii, jj, inum, jnum, itable, itype, jtype; double qtmp, xtmp, ytmp, ztmp, delx, dely, delz, evdwl, ecoul, fpair; double fraction, table; double rsq, r, rinv, r2inv, r3inv, r6inv, forcecoul, forcelj; double grij, expm2, prefactor, t, erfc; double factor_coul, factor_lj; int *ilist, *jlist, *numneigh, **firstneigh; evdwl = ecoul = 0.0; ev_init(eflag, vflag); double **x = atom->x; double **f = atom->f; double *q = atom->q; int *type = atom->type; int nlocal = atom->nlocal; double *special_coul = force->special_coul; double *special_lj = force->special_lj; int newton_pair = force->newton_pair; double qqrd2e = force->qqrd2e; inum = list->inum; ilist = list->ilist; numneigh = list->numneigh; firstneigh = list->firstneigh; // loop over neighbors of my atoms for (ii = 0; ii < inum; ii++) { i = ilist[ii]; qtmp = q[i]; xtmp = x[i][0]; ytmp = x[i][1]; ztmp = x[i][2]; itype = type[i]; jlist = firstneigh[i]; jnum = numneigh[i]; for (jj = 0; jj < jnum; jj++) { j = jlist[jj]; factor_lj = special_lj[sbmask(j)]; factor_coul = special_coul[sbmask(j)]; j &= NEIGHMASK; delx = xtmp - x[j][0]; dely = ytmp - x[j][1]; delz = ztmp - x[j][2]; rsq = delx * delx + dely * dely + delz * delz; jtype = type[j]; if (rsq < cutsq[itype][jtype]) { r2inv = 1.0 / rsq; if (rsq < cut_coulsq) { if (!ncoultablebits || rsq <= tabinnersq) { r = sqrt(rsq); grij = g_ewald * r; expm2 = exp(-grij * grij); t = 1.0 / (1.0 + EWALD_P * grij); erfc = t * (A1 + t * (A2 + t * (A3 + t * (A4 + t * A5)))) * expm2; prefactor = qqrd2e * qtmp * q[j] / r; forcecoul = prefactor * (erfc + EWALD_F * grij * expm2); if (factor_coul < 1.0) forcecoul -= (1.0 - factor_coul) * prefactor; } else { union_int_float_t rsq_lookup; rsq_lookup.f = rsq; itable = rsq_lookup.i & ncoulmask; itable >>= ncoulshiftbits; fraction = (rsq_lookup.f - rtable[itable]) * drtable[itable]; table = ftable[itable] + fraction * dftable[itable]; forcecoul = qtmp * q[j] * table; if (factor_coul < 1.0) { table = ctable[itable] + fraction * dctable[itable]; prefactor = qtmp * q[j] * table; forcecoul -= (1.0 - factor_coul) * prefactor; } } } else forcecoul = 0.0; if (rsq < cut_ljsq[itype][jtype]) { rinv = sqrt(r2inv); r3inv = r2inv * rinv; r6inv = r3inv * r3inv; forcelj = r6inv * (lj1[itype][jtype] * r3inv - lj2[itype][jtype]); } else forcelj = 0.0; fpair = (forcecoul + factor_lj * forcelj) * r2inv; f[i][0] += delx * fpair; f[i][1] += dely * fpair; f[i][2] += delz * fpair; if (newton_pair || j < nlocal) { f[j][0] -= delx * fpair; f[j][1] -= dely * fpair; f[j][2] -= delz * fpair; } if (eflag) { if (rsq < cut_coulsq) { if (!ncoultablebits || rsq <= tabinnersq) ecoul = prefactor * erfc; else { table = etable[itable] + fraction * detable[itable]; ecoul = qtmp * q[j] * table; } if (factor_coul < 1.0) ecoul -= (1.0 - factor_coul) * prefactor; } else ecoul = 0.0; if (rsq < cut_ljsq[itype][jtype]) { evdwl = r6inv * (lj3[itype][jtype] * r3inv - lj4[itype][jtype]) - offset[itype][jtype]; evdwl *= factor_lj; } else evdwl = 0.0; } if (evflag) ev_tally(i, j, nlocal, newton_pair, evdwl, ecoul, fpair, delx, dely, delz); } } } if (vflag_fdotr) virial_fdotr_compute(); } /* ---------------------------------------------------------------------- */ void PairLJClass2CoulLong::compute_inner() { int i, j, ii, jj, inum, jnum, itype, jtype; double qtmp, xtmp, ytmp, ztmp, delx, dely, delz, fpair; double rsq, rinv, r2inv, r3inv, r6inv, forcecoul, forcelj, factor_coul, factor_lj; double rsw; int *ilist, *jlist, *numneigh, **firstneigh; double **x = atom->x; double **f = atom->f; double *q = atom->q; int *type = atom->type; int nlocal = atom->nlocal; double *special_coul = force->special_coul; double *special_lj = force->special_lj; int newton_pair = force->newton_pair; double qqrd2e = force->qqrd2e; inum = list->inum_inner; ilist = list->ilist_inner; numneigh = list->numneigh_inner; firstneigh = list->firstneigh_inner; double cut_out_on = cut_respa[0]; double cut_out_off = cut_respa[1]; double cut_out_diff = cut_out_off - cut_out_on; double cut_out_on_sq = cut_out_on * cut_out_on; double cut_out_off_sq = cut_out_off * cut_out_off; // loop over neighbors of my atoms for (ii = 0; ii < inum; ii++) { i = ilist[ii]; qtmp = q[i]; xtmp = x[i][0]; ytmp = x[i][1]; ztmp = x[i][2]; itype = type[i]; jlist = firstneigh[i]; jnum = numneigh[i]; for (jj = 0; jj < jnum; jj++) { j = jlist[jj]; factor_lj = special_lj[sbmask(j)]; factor_coul = special_coul[sbmask(j)]; j &= NEIGHMASK; delx = xtmp - x[j][0]; dely = ytmp - x[j][1]; delz = ztmp - x[j][2]; rsq = delx * delx + dely * dely + delz * delz; if (rsq < cut_out_off_sq) { r2inv = 1.0 / rsq; forcecoul = qqrd2e * qtmp * q[j] * sqrt(r2inv); if (factor_coul < 1.0) forcecoul -= (1.0 - factor_coul) * forcecoul; jtype = type[j]; if (rsq < cut_ljsq[itype][jtype]) { rinv = sqrt(r2inv); r3inv = r2inv * rinv; r6inv = r3inv * r3inv; forcelj = r6inv * (lj1[itype][jtype] * r3inv - lj2[itype][jtype]); } else forcelj = 0.0; fpair = (forcecoul + factor_lj * forcelj) * r2inv; if (rsq > cut_out_on_sq) { rsw = (sqrt(rsq) - cut_out_on) / cut_out_diff; fpair *= 1.0 + rsw * rsw * (2.0 * rsw - 3.0); } f[i][0] += delx * fpair; f[i][1] += dely * fpair; f[i][2] += delz * fpair; if (newton_pair || j < nlocal) { f[j][0] -= delx * fpair; f[j][1] -= dely * fpair; f[j][2] -= delz * fpair; } } } } } /* ---------------------------------------------------------------------- */ void PairLJClass2CoulLong::compute_middle() { int i, j, ii, jj, inum, jnum, itype, jtype; double qtmp, xtmp, ytmp, ztmp, delx, dely, delz, fpair; double rsq, rinv, r2inv, r3inv, r6inv, forcecoul, forcelj, factor_coul, factor_lj; double rsw; int *ilist, *jlist, *numneigh, **firstneigh; double **x = atom->x; double **f = atom->f; double *q = atom->q; int *type = atom->type; int nlocal = atom->nlocal; double *special_coul = force->special_coul; double *special_lj = force->special_lj; int newton_pair = force->newton_pair; double qqrd2e = force->qqrd2e; inum = list->inum_middle; ilist = list->ilist_middle; numneigh = list->numneigh_middle; firstneigh = list->firstneigh_middle; double cut_in_off = cut_respa[0]; double cut_in_on = cut_respa[1]; double cut_out_on = cut_respa[2]; double cut_out_off = cut_respa[3]; double cut_in_diff = cut_in_on - cut_in_off; double cut_out_diff = cut_out_off - cut_out_on; double cut_in_off_sq = cut_in_off * cut_in_off; double cut_in_on_sq = cut_in_on * cut_in_on; double cut_out_on_sq = cut_out_on * cut_out_on; double cut_out_off_sq = cut_out_off * cut_out_off; // loop over neighbors of my atoms for (ii = 0; ii < inum; ii++) { i = ilist[ii]; qtmp = q[i]; xtmp = x[i][0]; ytmp = x[i][1]; ztmp = x[i][2]; itype = type[i]; jlist = firstneigh[i]; jnum = numneigh[i]; for (jj = 0; jj < jnum; jj++) { j = jlist[jj]; factor_lj = special_lj[sbmask(j)]; factor_coul = special_coul[sbmask(j)]; j &= NEIGHMASK; delx = xtmp - x[j][0]; dely = ytmp - x[j][1]; delz = ztmp - x[j][2]; rsq = delx * delx + dely * dely + delz * delz; if (rsq < cut_out_off_sq && rsq > cut_in_off_sq) { r2inv = 1.0 / rsq; forcecoul = qqrd2e * qtmp * q[j] * sqrt(r2inv); if (factor_coul < 1.0) forcecoul -= (1.0 - factor_coul) * forcecoul; jtype = type[j]; if (rsq < cut_ljsq[itype][jtype]) { rinv = sqrt(r2inv); r3inv = r2inv * rinv; r6inv = r3inv * r3inv; forcelj = r6inv * (lj1[itype][jtype] * r3inv - lj2[itype][jtype]); } else forcelj = 0.0; fpair = (forcecoul + factor_lj * forcelj) * r2inv; if (rsq < cut_in_on_sq) { rsw = (sqrt(rsq) - cut_in_off) / cut_in_diff; fpair *= rsw * rsw * (3.0 - 2.0 * rsw); } if (rsq > cut_out_on_sq) { rsw = (sqrt(rsq) - cut_out_on) / cut_out_diff; fpair *= 1.0 + rsw * rsw * (2.0 * rsw - 3.0); } f[i][0] += delx * fpair; f[i][1] += dely * fpair; f[i][2] += delz * fpair; if (newton_pair || j < nlocal) { f[j][0] -= delx * fpair; f[j][1] -= dely * fpair; f[j][2] -= delz * fpair; } } } } } /* ---------------------------------------------------------------------- */ void PairLJClass2CoulLong::compute_outer(int eflag, int vflag) { int i, j, ii, jj, inum, jnum, itype, jtype, itable; double qtmp, xtmp, ytmp, ztmp, delx, dely, delz, evdwl, ecoul, fpair; double fraction, table; double r, rinv, r2inv, r3inv, r6inv, forcecoul, forcelj, factor_coul, factor_lj; double grij, expm2, prefactor, t, erfc; double rsw; int *ilist, *jlist, *numneigh, **firstneigh; double rsq; evdwl = ecoul = 0.0; ev_init(eflag, vflag); double **x = atom->x; double **f = atom->f; double *q = atom->q; int *type = atom->type; int nlocal = atom->nlocal; double *special_coul = force->special_coul; double *special_lj = force->special_lj; int newton_pair = force->newton_pair; double qqrd2e = force->qqrd2e; inum = list->inum; ilist = list->ilist; numneigh = list->numneigh; firstneigh = list->firstneigh; double cut_in_off = cut_respa[2]; double cut_in_on = cut_respa[3]; double cut_in_diff = cut_in_on - cut_in_off; double cut_in_off_sq = cut_in_off * cut_in_off; double cut_in_on_sq = cut_in_on * cut_in_on; // loop over neighbors of my atoms for (ii = 0; ii < inum; ii++) { i = ilist[ii]; qtmp = q[i]; xtmp = x[i][0]; ytmp = x[i][1]; ztmp = x[i][2]; itype = type[i]; jlist = firstneigh[i]; jnum = numneigh[i]; for (jj = 0; jj < jnum; jj++) { j = jlist[jj]; factor_lj = special_lj[sbmask(j)]; factor_coul = special_coul[sbmask(j)]; j &= NEIGHMASK; delx = xtmp - x[j][0]; dely = ytmp - x[j][1]; delz = ztmp - x[j][2]; rsq = delx * delx + dely * dely + delz * delz; jtype = type[j]; if (rsq < cutsq[itype][jtype]) { r2inv = 1.0 / rsq; if (rsq < cut_coulsq) { if (!ncoultablebits || rsq <= tabinnersq) { r = sqrt(rsq); grij = g_ewald * r; expm2 = exp(-grij * grij); t = 1.0 / (1.0 + EWALD_P * grij); erfc = t * (A1 + t * (A2 + t * (A3 + t * (A4 + t * A5)))) * expm2; prefactor = qqrd2e * qtmp * q[j] / r; forcecoul = prefactor * (erfc + EWALD_F * grij * expm2 - 1.0); if (rsq > cut_in_off_sq) { if (rsq < cut_in_on_sq) { rsw = (r - cut_in_off) / cut_in_diff; forcecoul += prefactor * rsw * rsw * (3.0 - 2.0 * rsw); if (factor_coul < 1.0) forcecoul -= (1.0 - factor_coul) * prefactor * rsw * rsw * (3.0 - 2.0 * rsw); } else { forcecoul += prefactor; if (factor_coul < 1.0) forcecoul -= (1.0 - factor_coul) * prefactor; } } } else { union_int_float_t rsq_lookup; rsq_lookup.f = rsq; itable = rsq_lookup.i & ncoulmask; itable >>= ncoulshiftbits; fraction = (rsq_lookup.f - rtable[itable]) * drtable[itable]; table = ftable[itable] + fraction * dftable[itable]; forcecoul = qtmp * q[j] * table; if (factor_coul < 1.0) { table = ctable[itable] + fraction * dctable[itable]; prefactor = qtmp * q[j] * table; forcecoul -= (1.0 - factor_coul) * prefactor; } } } else forcecoul = 0.0; if (rsq < cut_ljsq[itype][jtype] && rsq > cut_in_off_sq) { rinv = sqrt(r2inv); r3inv = r2inv * rinv; r6inv = r3inv * r3inv; forcelj = r6inv * (lj1[itype][jtype] * r3inv - lj2[itype][jtype]); if (rsq < cut_in_on_sq) { rsw = (sqrt(rsq) - cut_in_off) / cut_in_diff; forcelj *= rsw * rsw * (3.0 - 2.0 * rsw); } } else forcelj = 0.0; fpair = (forcecoul + forcelj) * r2inv; f[i][0] += delx * fpair; f[i][1] += dely * fpair; f[i][2] += delz * fpair; if (newton_pair || j < nlocal) { f[j][0] -= delx * fpair; f[j][1] -= dely * fpair; f[j][2] -= delz * fpair; } if (eflag) { if (rsq < cut_coulsq) { if (!ncoultablebits || rsq <= tabinnersq) { ecoul = prefactor * erfc; if (factor_coul < 1.0) ecoul -= (1.0 - factor_coul) * prefactor; } else { table = etable[itable] + fraction * detable[itable]; ecoul = qtmp * q[j] * table; if (factor_coul < 1.0) { table = ptable[itable] + fraction * dptable[itable]; prefactor = qtmp * q[j] * table; ecoul -= (1.0 - factor_coul) * prefactor; } } } else ecoul = 0.0; if (rsq < cut_ljsq[itype][jtype]) { rinv = sqrt(r2inv); r3inv = r2inv * rinv; r6inv = r3inv * r3inv; evdwl = r6inv * (lj3[itype][jtype] * r3inv - lj4[itype][jtype]) - offset[itype][jtype]; evdwl *= factor_lj; } else evdwl = 0.0; } if (vflag) { if (rsq < cut_coulsq) { if (!ncoultablebits || rsq <= tabinnersq) { forcecoul = prefactor * (erfc + EWALD_F * grij * expm2); if (factor_coul < 1.0) forcecoul -= (1.0 - factor_coul) * prefactor; } else { table = vtable[itable] + fraction * dvtable[itable]; forcecoul = qtmp * q[j] * table; if (factor_coul < 1.0) { table = ptable[itable] + fraction * dptable[itable]; prefactor = qtmp * q[j] * table; forcecoul -= (1.0 - factor_coul) * prefactor; } } } else forcecoul = 0.0; if (rsq <= cut_in_off_sq) { rinv = sqrt(r2inv); r3inv = r2inv * rinv; r6inv = r3inv * r3inv; forcelj = r6inv * (lj1[itype][jtype] * r3inv - lj2[itype][jtype]); } else if (rsq <= cut_in_on_sq) { rinv = sqrt(r2inv); r3inv = r2inv * rinv; r6inv = r3inv * r3inv; forcelj = r6inv * (lj1[itype][jtype] * r3inv - lj2[itype][jtype]); } fpair = (forcecoul + factor_lj * forcelj) * r2inv; } if (evflag) ev_tally(i, j, nlocal, newton_pair, evdwl, ecoul, fpair, delx, dely, delz); } } } } /* ---------------------------------------------------------------------- allocate all arrays ------------------------------------------------------------------------- */ void PairLJClass2CoulLong::allocate() { allocated = 1; const int np1 = atom->ntypes + 1; memory->create(setflag, np1, np1, "pair:setflag"); for (int i = 1; i < np1; i++) for (int j = i; j < np1; j++) setflag[i][j] = 0; memory->create(cutsq, np1, np1, "pair:cutsq"); memory->create(cut_lj, np1, np1, "pair:cut_lj"); memory->create(cut_ljsq, np1, np1, "pair:cut_ljsq"); memory->create(epsilon, np1, np1, "pair:epsilon"); memory->create(sigma, np1, np1, "pair:sigma"); memory->create(lj1, np1, np1, "pair:lj1"); memory->create(lj2, np1, np1, "pair:lj2"); memory->create(lj3, np1, np1, "pair:lj3"); memory->create(lj4, np1, np1, "pair:lj4"); memory->create(offset, np1, np1, "pair:offset"); } /* ---------------------------------------------------------------------- global settings ------------------------------------------------------------------------- */ void PairLJClass2CoulLong::settings(int narg, char **arg) { if (narg < 1 || narg > 2) error->all(FLERR, "Illegal pair_style command"); cut_lj_global = utils::numeric(FLERR, arg[0], false, lmp); if (narg == 1) cut_coul = cut_lj_global; else cut_coul = utils::numeric(FLERR, arg[1], false, lmp); // reset cutoffs that have been explicitly set if (allocated) { int i, j; for (i = 1; i <= atom->ntypes; i++) for (j = i; j <= atom->ntypes; j++) if (setflag[i][j]) cut_lj[i][j] = cut_lj_global; } } /* ---------------------------------------------------------------------- set coeffs for one or more type pairs ------------------------------------------------------------------------- */ void PairLJClass2CoulLong::coeff(int narg, char **arg) { if (narg < 4 || narg > 5) error->all(FLERR, "Incorrect args for pair coefficients"); if (!allocated) allocate(); int ilo, ihi, jlo, jhi; utils::bounds(FLERR, arg[0], 1, atom->ntypes, ilo, ihi, error); utils::bounds(FLERR, arg[1], 1, atom->ntypes, jlo, jhi, error); double epsilon_one = utils::numeric(FLERR, arg[2], false, lmp); double sigma_one = utils::numeric(FLERR, arg[3], false, lmp); double cut_lj_one = cut_lj_global; if (narg == 5) cut_lj_one = utils::numeric(FLERR, arg[4], false, lmp); int count = 0; for (int i = ilo; i <= ihi; i++) { for (int j = MAX(jlo, i); j <= jhi; j++) { epsilon[i][j] = epsilon_one; sigma[i][j] = sigma_one; cut_lj[i][j] = cut_lj_one; setflag[i][j] = 1; count++; } } if (count == 0) error->all(FLERR, "Incorrect args for pair coefficients"); } /* ---------------------------------------------------------------------- init specific to this pair style ------------------------------------------------------------------------- */ void PairLJClass2CoulLong::init_style() { if (!atom->q_flag) error->all(FLERR, "Pair style lj/class2/coul/long requires atom attribute q"); // request regular or rRESPA neighbor list int list_style = NeighConst::REQ_DEFAULT; if (update->whichflag == 1 && utils::strmatch(update->integrate_style, "^respa")) { auto respa = dynamic_cast(update->integrate); if (respa->level_inner >= 0) list_style = NeighConst::REQ_RESPA_INOUT; if (respa->level_middle >= 0) list_style = NeighConst::REQ_RESPA_ALL; } neighbor->add_request(this, list_style); cut_coulsq = cut_coul * cut_coul; // set rRESPA cutoffs if (utils::strmatch(update->integrate_style, "^respa") && (dynamic_cast(update->integrate))->level_inner >= 0) cut_respa = (dynamic_cast(update->integrate))->cutoff; else cut_respa = nullptr; // insure use of KSpace long-range solver, set g_ewald if (force->kspace == nullptr) error->all(FLERR, "Pair style requires a KSpace style"); g_ewald = force->kspace->g_ewald; // setup force tables if (ncoultablebits) init_tables(cut_coul, cut_respa); } /* ---------------------------------------------------------------------- init for one type pair i,j and corresponding j,i ------------------------------------------------------------------------- */ double PairLJClass2CoulLong::init_one(int i, int j) { // always mix epsilon,sigma via sixthpower rules // mix distance via user-defined rule if (setflag[i][j] == 0) { epsilon[i][j] = 2.0 * sqrt(epsilon[i][i] * epsilon[j][j]) * pow(sigma[i][i], 3.0) * pow(sigma[j][j], 3.0) / (pow(sigma[i][i], 6.0) + pow(sigma[j][j], 6.0)); sigma[i][j] = pow((0.5 * (pow(sigma[i][i], 6.0) + pow(sigma[j][j], 6.0))), 1.0 / 6.0); cut_lj[i][j] = mix_distance(cut_lj[i][i], cut_lj[j][j]); did_mix = true; } double cut = MAX(cut_lj[i][j], cut_coul); cut_ljsq[i][j] = cut_lj[i][j] * cut_lj[i][j]; lj1[i][j] = 18.0 * epsilon[i][j] * pow(sigma[i][j], 9.0); lj2[i][j] = 18.0 * epsilon[i][j] * pow(sigma[i][j], 6.0); lj3[i][j] = 2.0 * epsilon[i][j] * pow(sigma[i][j], 9.0); lj4[i][j] = 3.0 * epsilon[i][j] * pow(sigma[i][j], 6.0); if (offset_flag && (cut_lj[i][j] > 0.0)) { double ratio = sigma[i][j] / cut_lj[i][j]; offset[i][j] = epsilon[i][j] * (2.0 * pow(ratio, 9.0) - 3.0 * pow(ratio, 6.0)); } else offset[i][j] = 0.0; cut_ljsq[j][i] = cut_ljsq[i][j]; lj1[j][i] = lj1[i][j]; lj2[j][i] = lj2[i][j]; lj3[j][i] = lj3[i][j]; lj4[j][i] = lj4[i][j]; offset[j][i] = offset[i][j]; // check interior rRESPA cutoff if (cut_respa && MIN(cut_lj[i][j], cut_coul) < cut_respa[3]) error->all(FLERR, "Pair cutoff < Respa interior cutoff"); // compute I,J contribution to long-range tail correction // count total # of atoms of type I and J via Allreduce if (tail_flag) { int *type = atom->type; int nlocal = atom->nlocal; double count[2], all[2]; count[0] = count[1] = 0.0; for (int k = 0; k < nlocal; k++) { if (type[k] == i) count[0] += 1.0; if (type[k] == j) count[1] += 1.0; } MPI_Allreduce(count, all, 2, MPI_DOUBLE, MPI_SUM, world); double sig3 = sigma[i][j] * sigma[i][j] * sigma[i][j]; double sig6 = sig3 * sig3; double rc3 = cut_lj[i][j] * cut_lj[i][j] * cut_lj[i][j]; double rc6 = rc3 * rc3; etail_ij = 2.0 * MY_PI * all[0] * all[1] * epsilon[i][j] * sig6 * (sig3 - 3.0 * rc3) / (3.0 * rc6); ptail_ij = 2.0 * MY_PI * all[0] * all[1] * epsilon[i][j] * sig6 * (sig3 - 2.0 * rc3) / rc6; } return cut; } /* ---------------------------------------------------------------------- proc 0 writes to restart file ------------------------------------------------------------------------- */ void PairLJClass2CoulLong::write_restart(FILE *fp) { write_restart_settings(fp); int i, j; for (i = 1; i <= atom->ntypes; i++) for (j = i; j <= atom->ntypes; j++) { fwrite(&setflag[i][j], sizeof(int), 1, fp); if (setflag[i][j]) { fwrite(&epsilon[i][j], sizeof(double), 1, fp); fwrite(&sigma[i][j], sizeof(double), 1, fp); fwrite(&cut_lj[i][j], sizeof(double), 1, fp); } } } /* ---------------------------------------------------------------------- proc 0 reads from restart file, bcasts ------------------------------------------------------------------------- */ void PairLJClass2CoulLong::read_restart(FILE *fp) { read_restart_settings(fp); allocate(); int i, j; int me = comm->me; for (i = 1; i <= atom->ntypes; i++) for (j = i; j <= atom->ntypes; j++) { if (me == 0) utils::sfread(FLERR, &setflag[i][j], sizeof(int), 1, fp, nullptr, error); MPI_Bcast(&setflag[i][j], 1, MPI_INT, 0, world); if (setflag[i][j]) { if (me == 0) { utils::sfread(FLERR, &epsilon[i][j], sizeof(double), 1, fp, nullptr, error); utils::sfread(FLERR, &sigma[i][j], sizeof(double), 1, fp, nullptr, error); utils::sfread(FLERR, &cut_lj[i][j], sizeof(double), 1, fp, nullptr, error); } MPI_Bcast(&epsilon[i][j], 1, MPI_DOUBLE, 0, world); MPI_Bcast(&sigma[i][j], 1, MPI_DOUBLE, 0, world); MPI_Bcast(&cut_lj[i][j], 1, MPI_DOUBLE, 0, world); } } } /* ---------------------------------------------------------------------- proc 0 writes to restart file ------------------------------------------------------------------------- */ void PairLJClass2CoulLong::write_restart_settings(FILE *fp) { fwrite(&cut_lj_global, sizeof(double), 1, fp); fwrite(&cut_coul, sizeof(double), 1, fp); fwrite(&offset_flag, sizeof(int), 1, fp); fwrite(&mix_flag, sizeof(int), 1, fp); fwrite(&tail_flag, sizeof(int), 1, fp); fwrite(&ncoultablebits, sizeof(int), 1, fp); fwrite(&tabinner, sizeof(double), 1, fp); } /* ---------------------------------------------------------------------- proc 0 reads from restart file, bcasts ------------------------------------------------------------------------- */ void PairLJClass2CoulLong::read_restart_settings(FILE *fp) { if (comm->me == 0) { utils::sfread(FLERR, &cut_lj_global, sizeof(double), 1, fp, nullptr, error); utils::sfread(FLERR, &cut_coul, sizeof(double), 1, fp, nullptr, error); utils::sfread(FLERR, &offset_flag, sizeof(int), 1, fp, nullptr, error); utils::sfread(FLERR, &mix_flag, sizeof(int), 1, fp, nullptr, error); utils::sfread(FLERR, &tail_flag, sizeof(int), 1, fp, nullptr, error); utils::sfread(FLERR, &ncoultablebits, sizeof(int), 1, fp, nullptr, error); utils::sfread(FLERR, &tabinner, sizeof(double), 1, fp, nullptr, error); } MPI_Bcast(&cut_lj_global, 1, MPI_DOUBLE, 0, world); MPI_Bcast(&cut_coul, 1, MPI_DOUBLE, 0, world); MPI_Bcast(&offset_flag, 1, MPI_INT, 0, world); MPI_Bcast(&mix_flag, 1, MPI_INT, 0, world); MPI_Bcast(&tail_flag, 1, MPI_INT, 0, world); MPI_Bcast(&ncoultablebits, 1, MPI_INT, 0, world); MPI_Bcast(&tabinner, 1, MPI_DOUBLE, 0, world); } /* ---------------------------------------------------------------------- proc 0 writes to data file ------------------------------------------------------------------------- */ void PairLJClass2CoulLong::write_data(FILE *fp) { for (int i = 1; i <= atom->ntypes; i++) fprintf(fp, "%d %g %g\n", i, epsilon[i][i], sigma[i][i]); } /* ---------------------------------------------------------------------- proc 0 writes all pairs to data file ------------------------------------------------------------------------- */ void PairLJClass2CoulLong::write_data_all(FILE *fp) { for (int i = 1; i <= atom->ntypes; i++) for (int j = i; j <= atom->ntypes; j++) fprintf(fp, "%d %d %g %g %g\n", i, j, epsilon[i][j], sigma[i][j], cut_lj[i][j]); } /* ---------------------------------------------------------------------- */ double PairLJClass2CoulLong::single(int i, int j, int itype, int jtype, double rsq, double factor_coul, double factor_lj, double &fforce) { double r2inv, r, rinv, r3inv, r6inv, grij, expm2, t, erfc, prefactor; double fraction, table, forcecoul, forcelj, phicoul, philj; int itable; r2inv = 1.0 / rsq; if (rsq < cut_coulsq) { if (!ncoultablebits || rsq <= tabinnersq) { r = sqrt(rsq); grij = g_ewald * r; expm2 = exp(-grij * grij); t = 1.0 / (1.0 + EWALD_P * grij); erfc = t * (A1 + t * (A2 + t * (A3 + t * (A4 + t * A5)))) * expm2; prefactor = force->qqrd2e * atom->q[i] * atom->q[j] / r; forcecoul = prefactor * (erfc + EWALD_F * grij * expm2); if (factor_coul < 1.0) forcecoul -= (1.0 - factor_coul) * prefactor; } else { union_int_float_t rsq_lookup; rsq_lookup.f = rsq; itable = rsq_lookup.i & ncoulmask; itable >>= ncoulshiftbits; fraction = (rsq_lookup.f - rtable[itable]) * drtable[itable]; table = ftable[itable] + fraction * dftable[itable]; forcecoul = atom->q[i] * atom->q[j] * table; if (factor_coul < 1.0) { table = ctable[itable] + fraction * dctable[itable]; prefactor = atom->q[i] * atom->q[j] * table; forcecoul -= (1.0 - factor_coul) * prefactor; } } } else forcecoul = 0.0; if (rsq < cut_ljsq[itype][jtype]) { rinv = sqrt(r2inv); r3inv = r2inv * rinv; r6inv = r3inv * r3inv; forcelj = r6inv * (lj1[itype][jtype] * r3inv - lj2[itype][jtype]); } else forcelj = 0.0; fforce = (forcecoul + factor_lj * forcelj) * r2inv; double eng = 0.0; if (rsq < cut_coulsq) { if (!ncoultablebits || rsq <= tabinnersq) phicoul = prefactor * erfc; else { table = etable[itable] + fraction * detable[itable]; phicoul = atom->q[i] * atom->q[j] * table; } if (factor_coul < 1.0) phicoul -= (1.0 - factor_coul) * prefactor; eng += phicoul; } if (rsq < cut_ljsq[itype][jtype]) { philj = r6inv * (lj3[itype][jtype] * r3inv - lj4[itype][jtype]) - offset[itype][jtype]; eng += factor_lj * philj; } return eng; } /* ---------------------------------------------------------------------- */ void *PairLJClass2CoulLong::extract(const char *str, int &dim) { dim = 0; if (strcmp(str, "cut_coul") == 0) return (void *) &cut_coul; dim = 2; if (strcmp(str, "epsilon") == 0) return (void *) epsilon; if (strcmp(str, "sigma") == 0) return (void *) sigma; return nullptr; }