/* -*- c++ -*- ---------------------------------------------------------- LAMMPS - Large-scale Atomic/Molecular Massively Parallel Simulator http://lammps.sandia.gov, Sandia National Laboratories Steve Plimpton, sjplimp@sandia.gov Copyright (2003) Sandia Corporation. Under the terms of Contract DE-AC04-94AL85000 with Sandia Corporation, the U.S. Government retains certain rights in this software. This software is distributed under the GNU General Public License. See the README file in the top-level LAMMPS directory. ------------------------------------------------------------------------- */ #ifdef FIX_CLASS FixStyle(tmd,FixTMD) #else #ifndef LMP_FIX_TMD_H #define LMP_FIX_TMD_H #include #include "fix.h" namespace LAMMPS_NS { class FixTMD : public Fix { public: FixTMD(class LAMMPS *, int, char **); ~FixTMD(); int setmask(); void init(); void initial_integrate(int); void initial_integrate_respa(int, int, int); double memory_usage(); void grow_arrays(int); void copy_arrays(int, int, int); int pack_exchange(int, double *); int unpack_exchange(int, double *); void reset_dt(); private: int me; int nfileevery,compressed; bigint previous_stat; FILE *fp; double rho_start,rho_stop,rho_old,masstotal; double dtv,dtf; double *step_respa; double work_lambda,work_analytical; double **xf,**xold; void readfile(char *); void open(char *); }; } #endif #endif /* ERROR/WARNING messages: E: Illegal ... command Self-explanatory. Check the input script syntax and compare to the documentation for the command. You can use -echo screen as a command-line option when running LAMMPS to see the offending line. E: Cannot use fix TMD unless atom map exists Using this fix requires the ability to lookup an atom index, which is provided by an atom map. An atom map does not exist (by default) for non-molecular problems. Using the atom_modify map command will force an atom map to be created. E: Cannot open fix tmd file %s The output file for the fix tmd command cannot be opened. Check that the path and name are correct. E: Cannot use fix TMD on massless group UNDOCUMENTED E: Fix tmd must come after integration fixes Any fix tmd command must appear in the input script after all time integration fixes (nve, nvt, npt). See the fix tmd documentation for details. E: Incorrect format in TMD target file Format of file read by fix tmd command is incorrect. W: Ignoring empty or incorrectly formatted line in target file UNDOCUMENTED E: TMD target file did not list all group atoms The target file for the fix tmd command did not list all atoms in the fix group. E: Cannot open gzipped file LAMMPS was compiled without support for reading and writing gzipped files through a pipeline to the gzip program with -DLAMMPS_GZIP. E: Cannot open file %s The specified file cannot be opened. Check that the path and name are correct. If the file is a compressed file, also check that the gzip executable can be found and run. */