/* ---------------------------------------------------------------------- LAMMPS - Large-scale Atomic/Molecular Massively Parallel Simulator http://lammps.sandia.gov, Sandia National Laboratories Steve Plimpton, sjplimp@sandia.gov Copyright (2003) Sandia Corporation. Under the terms of Contract DE-AC04-94AL85000 with Sandia Corporation, the U.S. Government retains certain rights in this software. This software is distributed under the GNU General Public License. See the README file in the top-level LAMMPS directory. ------------------------------------------------------------------------- */ #ifndef LMP_VARIABLE_H #define LMP_VARIABLE_H #include "stdlib.h" #include "pointers.h" namespace LAMMPS_NS { class Variable : protected Pointers { public: Variable(class LAMMPS *); ~Variable(); void set(int, char **); void set(char *, int, char **); int next(int, char **); int find(char *); int equalstyle(int); int atomstyle(int); char *retrieve(char *); double compute_equal(int); void compute_atom(int, int, double *, int, int); int int_between_brackets(char *&); double evaluate_boolean(char *); unsigned int data_mask(int ivar); unsigned int data_mask(char *str); private: int nvar; // # of defined variables int maxvar; // max # of variables arrays can hold char **names; // name of each variable int *style; // style of each variable int *num; // # of values for each variable int *which; // next available value for each variable int *pad; // 1 = pad loop/uloop variables with 0s, 0 = no pad class VarReader **reader; // variable that reads lines from file char ***data; // str value of each variable's values int *eval_in_progress; // flag if evaluation of variable is in progress class RanMars *randomequal; // random number generator for equal-style vars class RanMars *randomatom; // random number generator for atom-style vars int precedence[16]; // precedence level of math operators // set length to include OR in enum int me; struct Tree { // parse tree for atom-style variables double value; double *array; int *iarray; int type; int nstride; int ivalue1,ivalue2; Tree *left,*middle,*right; }; void remove(int); void grow(); void copy(int, char **, char **); double evaluate(char *, Tree **); double collapse_tree(Tree *); double eval_tree(Tree *, int); void free_tree(Tree *); int find_matching_paren(char *, int, char *&); int math_function(char *, char *, Tree **, Tree **, int &, double *, int &); int group_function(char *, char *, Tree **, Tree **, int &, double *, int &); int region_function(char *); int special_function(char *, char *, Tree **, Tree **, int &, double *, int &); void peratom2global(int, char *, double *, int, int, Tree **, Tree **, int &, double *, int &); int is_atom_vector(char *); void atom_vector(char *, Tree **, Tree **, int &); int is_constant(char *); double constant(char *); double numeric(char *); int inumeric(char *); char *find_next_comma(char *); void print_tree(Tree *, int); }; class VarReader : protected Pointers { public: VarReader(class LAMMPS *, char *); ~VarReader(); int read(char *); private: int me; FILE *fp; }; } #endif /* ERROR/WARNING messages: E: Illegal ... command Self-explanatory. Check the input script syntax and compare to the documentation for the command. You can use -echo screen as a command-line option when running LAMMPS to see the offending line. E: World variable count doesn't match # of partitions A world-style variable must specify a number of values equal to the number of processor partitions. E: Universe/uloop variable count < # of partitions A universe or uloop style variable must specify a number of values >= to the number of processor partitions. E: All universe/uloop variables must have same # of values Self-explanatory. E: Cannot redefine variable as a different style An equal-style variable can be re-defined but only if it was originally an equal-style variable. E: Variable name must be alphanumeric or underscore characters Self-explanatory. E: Invalid variable in next command Self-explanatory. E: All variables in next command must be same style Self-explanatory. E: Invalid variable style with next command Variable styles {equal} and {world} cannot be used in a next command. E: Invalid syntax in variable formula Self-explanatory. E: Variable evaluation before simulation box is defined Cannot evaluate a compute or fix or atom-based value in a variable before the simulation has been setup. E: Invalid compute ID in variable formula The compute is not recognized. E: Compute used in variable between runs is not current Computes cannot be invoked by a variable in between runs. Thus they must have been evaluated on the last timestep of the previous run in order for their value(s) to be accessed. See the doc page for the variable command for more info. E: Variable formula compute vector is accessed out-of-range Self-explanatory. E: Variable formula compute array is accessed out-of-range Self-explanatory. E: Per-atom compute in equal-style variable formula Equal-style variables cannot use per-atom quantities. E: Mismatched compute in variable formula A compute is referenced incorrectly or a compute that produces per-atom values is used in an equal-style variable formula. E: Invalid fix ID in variable formula The fix is not recognized. E: Fix in variable not computed at compatible time Fixes generate their values on specific timesteps. The variable is requesting the values on a non-allowed timestep. E: Variable formula fix vector is accessed out-of-range Self-explanatory. E: Variable formula fix array is accessed out-of-range Self-explanatory. E: Per-atom fix in equal-style variable formula Equal-style variables cannot use per-atom quantities. E: Mismatched fix in variable formula A fix is referenced incorrectly or a fix that produces per-atom values is used in an equal-style variable formula. E: Invalid variable name in variable formula Variable name is not recognized. E: Invalid variable evaluation in variable formula A variable used in a formula could not be evaluated. E: Atom-style variable in equal-style variable formula Atom-style variables generate one value per atom which is not allowed in an equal-style variable. E: Mismatched variable in variable formula A variable is referenced incorrectly or an atom-style variable that produces per-atom values is used in an equal-style variable formula. E: Invalid math/group/special function in variable formula Self-explanatory. E: Invalid thermo keyword in variable formula The keyword is not recognized. E: Divide by 0 in variable formula Self-explanatory. E: Power by 0 in variable formula Self-explanatory. E: Sqrt of negative value in variable formula Self-explanatory. E: Log of zero/negative value in variable formula Self-explanatory. E: Arcsin of invalid value in variable formula Argument of arcsin() must be between -1 and 1. E: Arccos of invalid value in variable formula Argument of arccos() must be between -1 and 1. E: Invalid math function in variable formula Self-explanatory. E: Non digit character between brackets in variable Self-explantory. E: Mismatched brackets in variable Self-explanatory. E: Empty brackets in variable There is no variable syntax that uses empty brackets. Check the variable doc page. E: Index between variable brackets must be positive Self-explanatory. E: Cannot use ramp in variable formula between runs This is because the ramp() function is time dependent. E: Cannot use vdisplace in variable formula between runs This is a function of elapsed time. E: Cannot use swiggle in variable formula between runs This is a function of elapsed time. E: Cannot use cwiggle in variable formula between runs This is a function of elapsed time. E: Group ID in variable formula does not exist Self-explanatory. E: Invalid group function in variable formula Group function is not recognized. E: Region ID in variable formula does not exist Self-explanatory. E: Invalid special function in variable formula Self-explanatory. E: Gmask function in equal-style variable formula Gmask is per-atom operation. E: Rmask function in equal-style variable formula Rmask is per-atom operation. E: Grmask function in equal-style variable formula Grmask is per-atom operation. E: Indexed per-atom vector in variable formula without atom map Accessing a value from an atom vector requires the ability to lookup an atom index, which is provided by an atom map. An atom map does not exist (by default) for non-molecular problems. Using the atom_modify map command will force an atom map to be created. E: Invalid atom vector in variable formula The atom vector is not recognized. E: Atom vector in equal-style variable formula Atom vectors generate one value per atom which is not allowed in an equal-style variable. E: Expected floating point parameter in variable definition The quantity being read is a non-numeric value. E: Expected integer parameter in variable definition The quantity being read is a floating point or non-numeric value. E: Invalid Boolean syntax in if command Self-explanatory. */