LAMMPS (10 Feb 2021) # 3d Lennard-Jones melt variable x index 1 variable y index 1 variable z index 1 variable xx equal 20*$x variable xx equal 20*1 variable yy equal 20*$y variable yy equal 20*1 variable zz equal 20*$z variable zz equal 20*1 units real lattice fcc 4.4300 Lattice spacing in x,y,z = 4.4300000 4.4300000 4.4300000 region box block 0 ${xx} 0 ${yy} 0 ${zz} region box block 0 20 0 ${yy} 0 ${zz} region box block 0 20 0 20 0 ${zz} region box block 0 20 0 20 0 20 create_box 1 box Created orthogonal box = (0.0000000 0.0000000 0.0000000) to (88.600000 88.600000 88.600000) 1 by 2 by 2 MPI processor grid create_atoms 1 box Created 32000 atoms create_atoms CPU = 0.001 seconds pair_style lj/cut 8.1500 pair_coeff 1 1 0.0104 3.4000 #pair_style kim LennardJones_Ar #pair_coeff * * Ar mass 1 39.95 velocity all create 200.0 232345 loop geom neighbor 0.3 bin neigh_modify delay 0 every 1 check yes fix 1 all nve #fix 1 all npt temp 1.0 1.0 1.0 iso 1.0 1.0 3.0 run 100 Neighbor list info ... update every 1 steps, delay 0 steps, check yes max neighbors/atom: 2000, page size: 100000 master list distance cutoff = 8.45 ghost atom cutoff = 8.45 binsize = 4.225, bins = 21 21 21 1 neighbor lists, perpetual/occasional/extra = 1 0 0 (1) pair lj/cut, perpetual attributes: half, newton on pair build: half/bin/atomonly/newton stencil: half/bin/3d/newton bin: standard Per MPI rank memory allocation (min/avg/max) = 7.633 | 7.633 | 7.633 Mbytes Step Temp E_pair E_mol TotEng Press 0 200 6290.8194 0 25367.408 6750.7421 100 98.747096 15900.676 0 25319.465 10184.453 Loop time of 0.532082 on 4 procs for 100 steps with 32000 atoms Performance: 16.238 ns/day, 1.478 hours/ns, 187.941 timesteps/s 99.8% CPU use with 4 MPI tasks x no OpenMP threads MPI task timing breakdown: Section | min time | avg time | max time |%varavg| %total --------------------------------------------------------------- Pair | 0.46077 | 0.46347 | 0.46621 | 0.3 | 87.10 Neigh | 0.038499 | 0.038599 | 0.038759 | 0.0 | 7.25 Comm | 0.01395 | 0.016623 | 0.019377 | 1.7 | 3.12 Output | 3.1e-05 | 3.675e-05 | 4.7e-05 | 0.0 | 0.01 Modify | 0.00787 | 0.007971 | 0.008083 | 0.1 | 1.50 Other | | 0.005382 | | | 1.01 Nlocal: 8000.00 ave 8012 max 7989 min Histogram: 1 0 0 0 2 0 0 0 0 1 Nghost: 9131.00 ave 9142 max 9119 min Histogram: 1 0 0 0 0 2 0 0 0 1 Neighs: 490066.0 ave 491443 max 489273 min Histogram: 2 0 0 0 1 0 0 0 0 1 Total # of neighbors = 1960266 Ave neighs/atom = 61.258313 Neighbor list builds = 3 Dangerous builds = 0 Total wall time: 0:00:00