LAMMPS (21 Feb 2017) using 1 OpenMP thread(s) per MPI task processors * * 1 units metal boundary p p f read_data adatom.data orthogonal box = (0 0 0) to (17.1214 14.8276 39.3197) 1 by 1 by 1 MPI processor grid reading atoms ... 181 atoms pair_style agni pair_coeff * * Al_jpc.agni Al Reading potential file Al_jpc.agni with DATE: 2017-02-24 neighbor 0.3 bin neigh_modify delay 2 check yes timestep 0.0005 velocity all create 500 12345 fix 1 all nvt temp 250 250 0.2 fix 5 all momentum 1 linear 1 1 1 thermo 100 thermo_style custom step ke temp # dump MyDump all custom 250 dump.atoms id type x y z vx vy vz fx fy fz run 1000 Neighbor list info ... update every 1 steps, delay 2 steps, check yes max neighbors/atom: 2000, page size: 100000 master list distance cutoff = 8.3 ghost atom cutoff = 8.3 binsize = 4.15, bins = 5 4 10 1 neighbor lists, perpetual/occasional/extra = 1 0 0 (1) pair agni, perpetual attributes: full, newton on pair build: full/bin/atomonly stencil: full/bin/3d bin: standard Memory usage per processor = 2.69795 Mbytes Step KinEng Temp 0 11.633413 500 100 4.6059939 197.964 200 7.3700149 316.76065 300 6.0443913 259.78581 400 6.1631189 264.88868 500 6.2647272 269.25577 600 5.2732539 226.6426 700 5.6514471 242.89721 800 6.5572407 281.8279 900 6.0576738 260.35669 1000 6.5622233 282.04205 Loop time of 51.9308 on 1 procs for 1000 steps with 181 atoms Performance: 0.832 ns/day, 28.850 hours/ns, 19.256 timesteps/s 99.4% CPU use with 1 MPI tasks x 1 OpenMP threads MPI task timing breakdown: Section | min time | avg time | max time |%varavg| %total --------------------------------------------------------------- Pair | 51.89 | 51.89 | 51.89 | 0.0 | 99.92 Neigh | 0.023158 | 0.023158 | 0.023158 | 0.0 | 0.04 Comm | 0.0049036 | 0.0049036 | 0.0049036 | 0.0 | 0.01 Output | 0.0002594 | 0.0002594 | 0.0002594 | 0.0 | 0.00 Modify | 0.010244 | 0.010244 | 0.010244 | 0.0 | 0.02 Other | | 0.002483 | | | 0.00 Nlocal: 181 ave 181 max 181 min Histogram: 1 0 0 0 0 0 0 0 0 0 Nghost: 563 ave 563 max 563 min Histogram: 1 0 0 0 0 0 0 0 0 0 Neighs: 0 ave 0 max 0 min Histogram: 1 0 0 0 0 0 0 0 0 0 FullNghs: 19484 ave 19484 max 19484 min Histogram: 1 0 0 0 0 0 0 0 0 0 Total # of neighbors = 19484 Ave neighs/atom = 107.646 Neighbor list builds = 33 Dangerous builds = 0 Please see the log.cite file for references relevant to this simulation Total wall time: 0:00:52