/* ---------------------------------------------------------------------- LAMMPS - Large-scale Atomic/Molecular Massively Parallel Simulator http://lammps.sandia.gov, Sandia National Laboratories Steve Plimpton, sjplimp@sandia.gov Copyright (2003) Sandia Corporation. Under the terms of Contract DE-AC04-94AL85000 with Sandia Corporation, the U.S. Government retains certain rights in this software. This software is distributed under the GNU General Public License. See the README file in the top-level LAMMPS directory. ------------------------------------------------------------------------- */ /* ---------------------------------------------------------------------- Contributing author: Carsten Svaneborg (SDU) ------------------------------------------------------------------------- */ #include #include #include #include #include "pair_zero.h" #include "atom.h" #include "comm.h" #include "force.h" #include "memory.h" #include "error.h" using namespace LAMMPS_NS; /* ---------------------------------------------------------------------- */ PairZero::PairZero(LAMMPS *lmp) : Pair(lmp) { coeffflag=1; writedata=1; } /* ---------------------------------------------------------------------- */ PairZero::~PairZero() { if (allocated) { memory->destroy(setflag); memory->destroy(cutsq); memory->destroy(cut); } } /* ---------------------------------------------------------------------- */ void PairZero::compute(int eflag, int vflag) { if (eflag || vflag) ev_setup(eflag,vflag); else evflag = vflag_fdotr = 0; if (vflag_fdotr) virial_fdotr_compute(); } /* ---------------------------------------------------------------------- allocate all arrays ------------------------------------------------------------------------- */ void PairZero::allocate() { allocated = 1; int n = atom->ntypes; memory->create(setflag,n+1,n+1,"pair:setflag"); for (int i = 1; i <= n; i++) for (int j = i; j <= n; j++) setflag[i][j] = 0; memory->create(cutsq,n+1,n+1,"pair:cutsq"); memory->create(cut,n+1,n+1,"pair:cut"); } /* ---------------------------------------------------------------------- global settings ------------------------------------------------------------------------- */ void PairZero::settings(int narg, char **arg) { if ((narg != 1) && (narg != 2)) error->all(FLERR,"Illegal pair_style command"); cut_global = force->numeric(FLERR,arg[0]); if (narg == 2) { if (strcmp("nocoeff",arg[1]) == 0) coeffflag=0; else error->all(FLERR,"Illegal pair_style command"); } // reset cutoffs that have been explicitly set if (allocated) { int i,j; for (i = 1; i <= atom->ntypes; i++) for (j = i+1; j <= atom->ntypes; j++) cut[i][j] = cut_global; } } /* ---------------------------------------------------------------------- set coeffs for one or more type pairs ------------------------------------------------------------------------- */ void PairZero::coeff(int narg, char **arg) { if ((narg < 2) || (coeffflag && narg > 3)) error->all(FLERR,"Incorrect args for pair coefficients"); if (!allocated) allocate(); int ilo,ihi,jlo,jhi; force->bounds(FLERR,arg[0],atom->ntypes,ilo,ihi); force->bounds(FLERR,arg[1],atom->ntypes,jlo,jhi); double cut_one = cut_global; if (coeffflag && (narg == 3)) cut_one = force->numeric(FLERR,arg[2]); int count = 0; for (int i = ilo; i <= ihi; i++) { for (int j = MAX(jlo,i); j <= jhi; j++) { cut[i][j] = cut_one; setflag[i][j] = 1; count++; } } if (count == 0) error->all(FLERR,"Incorrect args for pair coefficients"); } /* ---------------------------------------------------------------------- init for one type pair i,j and corresponding j,i ------------------------------------------------------------------------- */ double PairZero::init_one(int i, int j) { if (setflag[i][j] == 0) { cut[i][j] = mix_distance(cut[i][i],cut[j][j]); } return cut[i][j]; } /* ---------------------------------------------------------------------- proc 0 writes to restart file ------------------------------------------------------------------------- */ void PairZero::write_restart(FILE *fp) { write_restart_settings(fp); int i,j; for (i = 1; i <= atom->ntypes; i++) for (j = i; j <= atom->ntypes; j++) { fwrite(&setflag[i][j],sizeof(int),1,fp); if (setflag[i][j]) { fwrite(&cut[i][j],sizeof(double),1,fp); } } } /* ---------------------------------------------------------------------- proc 0 reads from restart file, bcasts ------------------------------------------------------------------------- */ void PairZero::read_restart(FILE *fp) { read_restart_settings(fp); allocate(); int i,j; int me = comm->me; for (i = 1; i <= atom->ntypes; i++) for (j = i; j <= atom->ntypes; j++) { if (me == 0) fread(&setflag[i][j],sizeof(int),1,fp); MPI_Bcast(&setflag[i][j],1,MPI_INT,0,world); if (setflag[i][j]) { if (me == 0) { fread(&cut[i][j],sizeof(double),1,fp); } MPI_Bcast(&cut[i][j],1,MPI_DOUBLE,0,world); } } } /* ---------------------------------------------------------------------- proc 0 writes to restart file ------------------------------------------------------------------------- */ void PairZero::write_restart_settings(FILE *fp) { fwrite(&cut_global,sizeof(double),1,fp); fwrite(&coeffflag,sizeof(int),1,fp); } /* ---------------------------------------------------------------------- proc 0 reads from restart file, bcasts ------------------------------------------------------------------------- */ void PairZero::read_restart_settings(FILE *fp) { int me = comm->me; if (me == 0) { fread(&cut_global,sizeof(double),1,fp); fread(&coeffflag,sizeof(int),1,fp); } MPI_Bcast(&cut_global,1,MPI_DOUBLE,0,world); MPI_Bcast(&coeffflag,1,MPI_INT,0,world); } /* ---------------------------------------------------------------------- proc 0 writes to data file ------------------------------------------------------------------------- */ void PairZero::write_data(FILE *fp) { for (int i = 1; i <= atom->ntypes; i++) fprintf(fp,"%d\n",i); } /* ---------------------------------------------------------------------- proc 0 writes all pairs to data file ------------------------------------------------------------------------- */ void PairZero::write_data_all(FILE *fp) { for (int i = 1; i <= atom->ntypes; i++) for (int j = i; j <= atom->ntypes; j++) fprintf(fp,"%d %d %g\n",i,j,cut[i][j]); }