# water hexamer with AMOEBA or HIPPO units real boundary s s s atom_style amoeba bond_style class2 angle_style amoeba dihedral_style none # per-atom properties required by AMOEBA or HIPPO fix amtype all property/atom i_amtype ghost yes fix extra all property/atom i_amgroup d_redID d_pval ghost yes fix extra2 all property/atom i_polaxe d2_xyzaxis 3 # read data file read_data data.water_hexamer.hippo fix amtype NULL "Tinker Types" # force field pair_style hippo pair_coeff * * hippo_water.prm hippo_water.key special_bonds lj/coul 0.5 0.5 0.5 one/five yes # thermo output compute virial all pressure NULL virial thermo_style custom step temp epair ebond eangle edihed eimp & emol etotal press c_virial[*] #dump 1 all custom 10 dump.water_hexamer id type x y z fx fy fz #dump_modify 1 sort id # dynamics fix 1 all nve thermo 10 run 100