/* ---------------------------------------------------------------------- LAMMPS - Large-scale Atomic/Molecular Massively Parallel Simulator https://www.lammps.org/, Sandia National Laboratories LAMMPS development team: developers@lammps.org Copyright (2003) Sandia Corporation. Under the terms of Contract DE-AC04-94AL85000 with Sandia Corporation, the U.S. Government retains certain rights in this software. This software is distributed under the GNU General Public License. See the README file in the top-level LAMMPS directory. ------------------------------------------------------------------------- */ #include "compute_erotate_sphere_atom.h" #include "atom.h" #include "comm.h" #include "error.h" #include "force.h" #include "memory.h" #include "modify.h" #include "update.h" using namespace LAMMPS_NS; static constexpr double INERTIA = 0.4; // moment of inertia prefactor for sphere /* ---------------------------------------------------------------------- */ ComputeErotateSphereAtom::ComputeErotateSphereAtom(LAMMPS *lmp, int narg, char **arg) : Compute(lmp, narg, arg), erot(nullptr) { if (narg != 3) error->all(FLERR, "Illegal compute erotate/sphere//atom command"); peratom_flag = 1; size_peratom_cols = 0; // error check if (!atom->omega_flag) error->all(FLERR, "Compute erotate/sphere/atom requires atom attribute omega"); if (!atom->radius_flag) error->all(FLERR, "Compute erotate/sphere/atom requires atom attribute radius"); nmax = 0; } /* ---------------------------------------------------------------------- */ ComputeErotateSphereAtom::~ComputeErotateSphereAtom() { memory->destroy(erot); } /* ---------------------------------------------------------------------- */ void ComputeErotateSphereAtom::init() { if (modify->get_compute_by_style(style).size() > 1) if (comm->me == 0) error->warning(FLERR, "More than one compute {}", style); pfactor = 0.5 * force->mvv2e * INERTIA; } /* ---------------------------------------------------------------------- */ void ComputeErotateSphereAtom::compute_peratom() { invoked_peratom = update->ntimestep; // grow erot array if necessary if (atom->nmax > nmax) { memory->destroy(erot); nmax = atom->nmax; memory->create(erot, nmax, "erotate/sphere/atom:erot"); vector_atom = erot; } // compute rotational kinetic energy for each atom in group // point particles will have erot = 0.0, due to radius = 0.0 double **omega = atom->omega; double *radius = atom->radius; double *rmass = atom->rmass; int *mask = atom->mask; int nlocal = atom->nlocal; for (int i = 0; i < nlocal; i++) { if (mask[i] & groupbit) { erot[i] = (omega[i][0] * omega[i][0] + omega[i][1] * omega[i][1] + omega[i][2] * omega[i][2]) * radius[i] * radius[i] * rmass[i]; erot[i] *= pfactor; } else erot[i] = 0.0; } } /* ---------------------------------------------------------------------- memory usage of local atom-based array ------------------------------------------------------------------------- */ double ComputeErotateSphereAtom::memory_usage() { double bytes = (double) nmax * sizeof(double); return bytes; }