/* ---------------------------------------------------------------------- LAMMPS - Large-scale Atomic/Molecular Massively Parallel Simulator http://lammps.sandia.gov, Sandia National Laboratories Steve Plimpton, sjplimp@sandia.gov Copyright (2003) Sandia Corporation. Under the terms of Contract DE-AC04-94AL85000 with Sandia Corporation, the U.S. Government retains certain rights in this software. This software is distributed under the GNU General Public License. See the README file in the top-level LAMMPS directory. ------------------------------------------------------------------------- */ /* ---------------------------------------------------------------------- Contributing author: Axel Kohlmeyer (Temple U) ------------------------------------------------------------------------- */ #include "math.h" #include "improper_class2_omp.h" #include "atom.h" #include "comm.h" #include "neighbor.h" #include "domain.h" #include "force.h" #include "update.h" #include "error.h" #include "suffix.h" using namespace LAMMPS_NS; #define TOLERANCE 0.05 #define SMALL 0.001 /* ---------------------------------------------------------------------- */ ImproperClass2OMP::ImproperClass2OMP(class LAMMPS *lmp) : ImproperClass2(lmp), ThrOMP(lmp,THR_IMPROPER) { suffix_flag |= Suffix::OMP; } /* ---------------------------------------------------------------------- */ void ImproperClass2OMP::compute(int eflag, int vflag) { if (eflag || vflag) { ev_setup(eflag,vflag); } else evflag = 0; const int nall = atom->nlocal + atom->nghost; const int nthreads = comm->nthreads; const int inum = neighbor->nimproperlist; #if defined(_OPENMP) #pragma omp parallel default(none) shared(eflag,vflag) #endif { int ifrom, ito, tid; loop_setup_thr(ifrom, ito, tid, inum, nthreads); ThrData *thr = fix->get_thr(tid); ev_setup_thr(eflag, vflag, nall, eatom, vatom, thr); if (inum > 0) { if (evflag) { if (eflag) { if (force->newton_bond) eval<1,1,1>(ifrom, ito, thr); else eval<1,1,0>(ifrom, ito, thr); } else { if (force->newton_bond) eval<1,0,1>(ifrom, ito, thr); else eval<1,0,0>(ifrom, ito, thr); } } else { if (force->newton_bond) eval<0,0,1>(ifrom, ito, thr); else eval<0,0,0>(ifrom, ito, thr); } } reduce_thr(this, eflag, vflag, thr); } // end of omp parallel region } template void ImproperClass2OMP::eval(int nfrom, int nto, ThrData * const thr) { int i1,i2,i3,i4,i,j,k,n,type; double eimproper; double delr[3][3],rmag[3],rinvmag[3],rmag2[3]; double theta[3],costheta[3],sintheta[3]; double cossqtheta[3],sinsqtheta[3],invstheta[3]; double rABxrCB[3],rDBxrAB[3],rCBxrDB[3]; double ddelr[3][4],dr[3][4][3],dinvr[3][4][3]; double dthetadr[3][4][3],dinvsth[3][4][3]; double dinv3r[4][3],dinvs3r[3][4][3]; double drCBxrDB[3],rCBxdrDB[3],drDBxrAB[3],rDBxdrAB[3]; double drABxrCB[3],rABxdrCB[3]; double dot1,dot2,dd[3]; double fdot[3][4][3],ftmp,invs3r[3],inv3r; double t,tt1,tt3,sc1; double dotCBDBAB,dotDBABCB,dotABCBDB; double chi,deltachi,d2chi,cossin2; double drAB[3][4][3],drCB[3][4][3],drDB[3][4][3]; double dchi[3][4][3],dtotalchi[4][3]; double schiABCD,chiABCD,schiCBDA,chiCBDA,schiDBAC,chiDBAC; double fabcd[4][3]; eimproper = 0.0; const dbl3_t * _noalias const x = (dbl3_t *) atom->x[0]; dbl3_t * _noalias const f = (dbl3_t *) thr->get_f()[0]; const int5_t * _noalias const improperlist = (int5_t *) neighbor->improperlist[0]; const int nlocal = atom->nlocal; for (i = 0; i < 3; i++) for (j = 0; j < 4; j++) for (k = 0; k < 3; k++) { dthetadr[i][j][k] = 0.0; drAB[i][j][k] = 0.0; drCB[i][j][k] = 0.0; drDB[i][j][k] = 0.0; } for (n = nfrom; n < nto; n++) { i1 = improperlist[n].a; i2 = improperlist[n].b; i3 = improperlist[n].c; i4 = improperlist[n].d; type = improperlist[n].t; if (k0[type] == 0.0) continue; // difference vectors delr[0][0] = x[i1].x - x[i2].x; delr[0][1] = x[i1].y - x[i2].y; delr[0][2] = x[i1].z - x[i2].z; delr[1][0] = x[i3].x - x[i2].x; delr[1][1] = x[i3].y - x[i2].y; delr[1][2] = x[i3].z - x[i2].z; delr[2][0] = x[i4].x - x[i2].x; delr[2][1] = x[i4].y - x[i2].y; delr[2][2] = x[i4].z - x[i2].z; // bond lengths and associated values for (i = 0; i < 3; i++) { rmag2[i] = delr[i][0]*delr[i][0] + delr[i][1]*delr[i][1] + delr[i][2]*delr[i][2]; rmag[i] = sqrt(rmag2[i]); rinvmag[i] = 1.0/rmag[i]; } // angle ABC, CBD, ABD costheta[0] = (delr[0][0]*delr[1][0] + delr[0][1]*delr[1][1] + delr[0][2]*delr[1][2]) / (rmag[0]*rmag[1]); costheta[1] = (delr[1][0]*delr[2][0] + delr[1][1]*delr[2][1] + delr[1][2]*delr[2][2]) / (rmag[1]*rmag[2]); costheta[2] = (delr[0][0]*delr[2][0] + delr[0][1]*delr[2][1] + delr[0][2]*delr[2][2]) / (rmag[0]*rmag[2]); // angle error check for (i = 0; i < 3; i++) { if (costheta[i] == -1.0) { int me = comm->me; if (screen) { char str[128]; sprintf(str, "Improper problem: %d/%d " BIGINT_FORMAT " %d %d %d %d", me, thr->get_tid(),update->ntimestep, atom->tag[i1],atom->tag[i2],atom->tag[i3],atom->tag[i4]); error->warning(FLERR,str,0); fprintf(screen," 1st atom: %d %g %g %g\n", me,x[i1].x,x[i1].y,x[i1].z); fprintf(screen," 2nd atom: %d %g %g %g\n", me,x[i2].x,x[i2].y,x[i2].z); fprintf(screen," 3rd atom: %d %g %g %g\n", me,x[i3].x,x[i3].y,x[i3].z); fprintf(screen," 4th atom: %d %g %g %g\n", me,x[i4].x,x[i4].y,x[i4].z); } } } for (i = 0; i < 3; i++) { if (costheta[i] > 1.0) costheta[i] = 1.0; if (costheta[i] < -1.0) costheta[i] = -1.0; theta[i] = acos(costheta[i]); cossqtheta[i] = costheta[i]*costheta[i]; sintheta[i] = sin(theta[i]); invstheta[i] = 1.0/sintheta[i]; sinsqtheta[i] = sintheta[i]*sintheta[i]; } // cross & dot products cross(delr[0],delr[1],rABxrCB); cross(delr[2],delr[0],rDBxrAB); cross(delr[1],delr[2],rCBxrDB); dotCBDBAB = dot(rCBxrDB,delr[0]); dotDBABCB = dot(rDBxrAB,delr[1]); dotABCBDB = dot(rABxrCB,delr[2]); t = rmag[0] * rmag[1] * rmag[2]; inv3r = 1.0/t; invs3r[0] = invstheta[1] * inv3r; invs3r[1] = invstheta[2] * inv3r; invs3r[2] = invstheta[0] * inv3r; // chi ABCD, CBDA, DBAC // final chi is average of three schiABCD = dotCBDBAB * invs3r[0]; chiABCD = asin(schiABCD); schiCBDA = dotDBABCB * invs3r[1]; chiCBDA = asin(schiCBDA); schiDBAC = dotABCBDB * invs3r[2]; chiDBAC = asin(schiDBAC); chi = (chiABCD + chiCBDA + chiDBAC) / 3.0; deltachi = chi - chi0[type]; d2chi = deltachi * deltachi; // energy if (EFLAG) eimproper = k0[type]*d2chi; // forces // define d(delr) // i = bond AB/CB/DB, j = atom A/B/C/D ddelr[0][0] = 1.0; ddelr[0][1] = -1.0; ddelr[0][2] = 0.0; ddelr[0][3] = 0.0; ddelr[1][0] = 0.0; ddelr[1][1] = -1.0; ddelr[1][2] = 1.0; ddelr[1][3] = 0.0; ddelr[2][0] = 0.0; ddelr[2][1] = -1.0; ddelr[2][2] = 0.0; ddelr[2][3] = 1.0; // compute d(|r|)/dr and d(1/|r|)/dr for each direction, bond and atom // define d(r) for each r // i = bond AB/CB/DB, j = atom A/B/C/D, k = X/Y/Z for (i = 0; i < 3; i++) for (j = 0; j < 4; j++) for (k = 0; k < 3; k++) { dr[i][j][k] = delr[i][k] * ddelr[i][j] / rmag[i]; dinvr[i][j][k] = -dr[i][j][k] / rmag2[i]; } // compute d(1 / (|r_AB| * |r_CB| * |r_DB|) / dr // i = atom A/B/C/D, j = X/Y/Z for (i = 0; i < 4; i++) for (j = 0; j < 3; j++) dinv3r[i][j] = rinvmag[1] * (rinvmag[2] * dinvr[0][i][j] + rinvmag[0] * dinvr[2][i][j]) + rinvmag[2] * rinvmag[0] * dinvr[1][i][j]; // compute d(theta)/d(r) for 3 angles // angleABC tt1 = costheta[0] / rmag2[0]; tt3 = costheta[0] / rmag2[1]; sc1 = 1.0 / sqrt(1.0 - cossqtheta[0]); dthetadr[0][0][0] = sc1 * ((tt1 * delr[0][0]) - (delr[1][0] * rinvmag[0] * rinvmag[1])); dthetadr[0][0][1] = sc1 * ((tt1 * delr[0][1]) - (delr[1][1] * rinvmag[0] * rinvmag[1])); dthetadr[0][0][2] = sc1 * ((tt1 * delr[0][2]) - (delr[1][2] * rinvmag[0] * rinvmag[1])); dthetadr[0][1][0] = -sc1 * ((tt1 * delr[0][0]) - (delr[1][0] * rinvmag[0] * rinvmag[1]) + (tt3 * delr[1][0]) - (delr[0][0] * rinvmag[0] * rinvmag[1])); dthetadr[0][1][1] = -sc1 * ((tt1 * delr[0][1]) - (delr[1][1] * rinvmag[0] * rinvmag[1]) + (tt3 * delr[1][1]) - (delr[0][1] * rinvmag[0] * rinvmag[1])); dthetadr[0][1][2] = -sc1 * ((tt1 * delr[0][2]) - (delr[1][2] * rinvmag[0] * rinvmag[1]) + (tt3 * delr[1][2]) - (delr[0][2] * rinvmag[0] * rinvmag[1])); dthetadr[0][2][0] = sc1 * ((tt3 * delr[1][0]) - (delr[0][0] * rinvmag[0] * rinvmag[1])); dthetadr[0][2][1] = sc1 * ((tt3 * delr[1][1]) - (delr[0][1] * rinvmag[0] * rinvmag[1])); dthetadr[0][2][2] = sc1 * ((tt3 * delr[1][2]) - (delr[0][2] * rinvmag[0] * rinvmag[1])); // angleCBD tt1 = costheta[1] / rmag2[1]; tt3 = costheta[1] / rmag2[2]; sc1 = 1.0 / sqrt(1.0 - cossqtheta[1]); dthetadr[1][2][0] = sc1 * ((tt1 * delr[1][0]) - (delr[2][0] * rinvmag[1] * rinvmag[2])); dthetadr[1][2][1] = sc1 * ((tt1 * delr[1][1]) - (delr[2][1] * rinvmag[1] * rinvmag[2])); dthetadr[1][2][2] = sc1 * ((tt1 * delr[1][2]) - (delr[2][2] * rinvmag[1] * rinvmag[2])); dthetadr[1][1][0] = -sc1 * ((tt1 * delr[1][0]) - (delr[2][0] * rinvmag[1] * rinvmag[2]) + (tt3 * delr[2][0]) - (delr[1][0] * rinvmag[2] * rinvmag[1])); dthetadr[1][1][1] = -sc1 * ((tt1 * delr[1][1]) - (delr[2][1] * rinvmag[1] * rinvmag[2]) + (tt3 * delr[2][1]) - (delr[1][1] * rinvmag[2] * rinvmag[1])); dthetadr[1][1][2] = -sc1 * ((tt1 * delr[1][2]) - (delr[2][2] * rinvmag[1] * rinvmag[2]) + (tt3 * delr[2][2]) - (delr[1][2] * rinvmag[2] * rinvmag[1])); dthetadr[1][3][0] = sc1 * ((tt3 * delr[2][0]) - (delr[1][0] * rinvmag[2] * rinvmag[1])); dthetadr[1][3][1] = sc1 * ((tt3 * delr[2][1]) - (delr[1][1] * rinvmag[2] * rinvmag[1])); dthetadr[1][3][2] = sc1 * ((tt3 * delr[2][2]) - (delr[1][2] * rinvmag[2] * rinvmag[1])); // angleABD tt1 = costheta[2] / rmag2[0]; tt3 = costheta[2] / rmag2[2]; sc1 = 1.0 / sqrt(1.0 - cossqtheta[2]); dthetadr[2][0][0] = sc1 * ((tt1 * delr[0][0]) - (delr[2][0] * rinvmag[0] * rinvmag[2])); dthetadr[2][0][1] = sc1 * ((tt1 * delr[0][1]) - (delr[2][1] * rinvmag[0] * rinvmag[2])); dthetadr[2][0][2] = sc1 * ((tt1 * delr[0][2]) - (delr[2][2] * rinvmag[0] * rinvmag[2])); dthetadr[2][1][0] = -sc1 * ((tt1 * delr[0][0]) - (delr[2][0] * rinvmag[0] * rinvmag[2]) + (tt3 * delr[2][0]) - (delr[0][0] * rinvmag[2] * rinvmag[0])); dthetadr[2][1][1] = -sc1 * ((tt1 * delr[0][1]) - (delr[2][1] * rinvmag[0] * rinvmag[2]) + (tt3 * delr[2][1]) - (delr[0][1] * rinvmag[2] * rinvmag[0])); dthetadr[2][1][2] = -sc1 * ((tt1 * delr[0][2]) - (delr[2][2] * rinvmag[0] * rinvmag[2]) + (tt3 * delr[2][2]) - (delr[0][2] * rinvmag[2] * rinvmag[0])); dthetadr[2][3][0] = sc1 * ((tt3 * delr[2][0]) - (delr[0][0] * rinvmag[2] * rinvmag[0])); dthetadr[2][3][1] = sc1 * ((tt3 * delr[2][1]) - (delr[0][1] * rinvmag[2] * rinvmag[0])); dthetadr[2][3][2] = sc1 * ((tt3 * delr[2][2]) - (delr[0][2] * rinvmag[2] * rinvmag[0])); // compute d( 1 / sin(theta))/dr // i = angle, j = atom, k = direction for (i = 0; i < 3; i++) { cossin2 = -costheta[i] / sinsqtheta[i]; for (j = 0; j < 4; j++) for (k = 0; k < 3; k++) dinvsth[i][j][k] = cossin2 * dthetadr[i][j][k]; } // compute d(1 / sin(theta) * |r_AB| * |r_CB| * |r_DB|)/dr // i = angle, j = atom for (i = 0; i < 4; i++) for (j = 0; j < 3; j++) { dinvs3r[0][i][j] = (invstheta[1] * dinv3r[i][j]) + (inv3r * dinvsth[1][i][j]); dinvs3r[1][i][j] = (invstheta[2] * dinv3r[i][j]) + (inv3r * dinvsth[2][i][j]); dinvs3r[2][i][j] = (invstheta[0] * dinv3r[i][j]) + (inv3r * dinvsth[0][i][j]); } // drCB(i,j,k), etc // i = vector X'/Y'/Z', j = atom A/B/C/D, k = direction X/Y/Z for (i = 0; i < 3; i++) { drCB[i][1][i] = -1.0; drAB[i][1][i] = -1.0; drDB[i][1][i] = -1.0; drDB[i][3][i] = 1.0; drCB[i][2][i] = 1.0; drAB[i][0][i] = 1.0; } // d((r_CB x r_DB) dot r_AB) // r_CB x d(r_DB) // d(r_CB) x r_DB // (r_CB x d(r_DB)) + (d(r_CB) x r_DB) // (r_CB x d(r_DB)) + (d(r_CB) x r_DB) dot r_AB // d(r_AB) dot (r_CB x r_DB) for (i = 0; i < 3; i++) for (j = 0; j < 4; j++) { cross(delr[1],drDB[i][j],rCBxdrDB); cross(drCB[i][j],delr[2],drCBxrDB); for (k = 0; k < 3; k++) dd[k] = rCBxdrDB[k] + drCBxrDB[k]; dot1 = dot(dd,delr[0]); dot2 = dot(rCBxrDB,drAB[i][j]); fdot[0][j][i] = dot1 + dot2; } // d((r_DB x r_AB) dot r_CB) // r_DB x d(r_AB) // d(r_DB) x r_AB // (r_DB x d(r_AB)) + (d(r_DB) x r_AB) // (r_DB x d(r_AB)) + (d(r_DB) x r_AB) dot r_CB // d(r_CB) dot (r_DB x r_AB) for (i = 0; i < 3; i++) for (j = 0; j < 4; j++) { cross(delr[2],drAB[i][j],rDBxdrAB); cross(drDB[i][j],delr[0],drDBxrAB); for (k = 0; k < 3; k++) dd[k] = rDBxdrAB[k] + drDBxrAB[k]; dot1 = dot(dd,delr[1]); dot2 = dot(rDBxrAB,drCB[i][j]); fdot[1][j][i] = dot1 + dot2; } // d((r_AB x r_CB) dot r_DB) // r_AB x d(r_CB) // d(r_AB) x r_CB // (r_AB x d(r_CB)) + (d(r_AB) x r_CB) // (r_AB x d(r_CB)) + (d(r_AB) x r_CB) dot r_DB // d(r_DB) dot (r_AB x r_CB) for (i = 0; i < 3; i++) for (j = 0; j < 4; j++) { cross(delr[0],drCB[i][j],rABxdrCB); cross(drAB[i][j],delr[1],drABxrCB); for (k = 0; k < 3; k++) dd[k] = rABxdrCB[k] + drABxrCB[k]; dot1 = dot(dd,delr[2]); dot2 = dot(rABxrCB,drDB[i][j]); fdot[2][j][i] = dot1 + dot2; } // force on each atom for (i = 0; i < 4; i++) for (j = 0; j < 3; j++) { ftmp = (fdot[0][i][j] * invs3r[0]) + (dinvs3r[0][i][j] * dotCBDBAB); dchi[0][i][j] = ftmp / cos(chiABCD); ftmp = (fdot[1][i][j] * invs3r[1]) + (dinvs3r[1][i][j] * dotDBABCB); dchi[1][i][j] = ftmp / cos(chiCBDA); ftmp = (fdot[2][i][j] * invs3r[2]) + (dinvs3r[2][i][j] * dotABCBDB); dchi[2][i][j] = ftmp / cos(chiDBAC); dtotalchi[i][j] = (dchi[0][i][j]+dchi[1][i][j]+dchi[2][i][j]) / 3.0; } for (i = 0; i < 4; i++) for (j = 0; j < 3; j++) fabcd[i][j] = -2.0*k0[type] * deltachi*dtotalchi[i][j]; // apply force to each of 4 atoms if (NEWTON_BOND || i1 < nlocal) { f[i1].x += fabcd[0][0]; f[i1].y += fabcd[0][1]; f[i1].z += fabcd[0][2]; } if (NEWTON_BOND || i2 < nlocal) { f[i2].x += fabcd[1][0]; f[i2].y += fabcd[1][1]; f[i2].z += fabcd[1][2]; } if (NEWTON_BOND || i3 < nlocal) { f[i3].x += fabcd[2][0]; f[i3].y += fabcd[2][1]; f[i3].z += fabcd[2][2]; } if (NEWTON_BOND || i4 < nlocal) { f[i4].x += fabcd[3][0]; f[i4].y += fabcd[3][1]; f[i4].z += fabcd[3][2]; } if (EVFLAG) ev_tally_thr(this,i1,i2,i3,i4,nlocal,NEWTON_BOND,eimproper, fabcd[0],fabcd[2],fabcd[3], delr[0][0],delr[0][1],delr[0][2], delr[1][0],delr[1][1],delr[1][2], delr[2][0]-delr[1][0],delr[2][1]-delr[1][1], delr[2][2]-delr[1][2],thr); } // compute angle-angle interactions angleangle_thr(nfrom,nto,thr); } /* ---------------------------------------------------------------------- angle-angle interactions within improper ------------------------------------------------------------------------- */ template void ImproperClass2OMP::angleangle_thr(int nfrom, int nto, ThrData * const thr) { int i1,i2,i3,i4,i,j,k,n,type; double eimproper; double delxAB,delyAB,delzAB,rABmag2,rAB; double delxBC,delyBC,delzBC,rBCmag2,rBC; double delxBD,delyBD,delzBD,rBDmag2,rBD; double costhABC,thetaABC,costhABD; double thetaABD,costhCBD,thetaCBD,dthABC,dthCBD,dthABD; double sc1,t1,t3,r12; double dthetadr[3][4][3],fabcd[4][3]; eimproper = 0.0; const dbl3_t * _noalias const x = (dbl3_t *) atom->x[0]; dbl3_t * _noalias const f = (dbl3_t *) thr->get_f()[0]; const int5_t * _noalias const improperlist = (int5_t *) neighbor->improperlist[0]; const int nlocal = atom->nlocal; for (n = nfrom; n < nto; n++) { i1 = improperlist[n].a; i2 = improperlist[n].b; i3 = improperlist[n].c; i4 = improperlist[n].d; type = improperlist[n].t; // difference vectors delxAB = x[i1].x - x[i2].x; delyAB = x[i1].y - x[i2].y; delzAB = x[i1].z - x[i2].z; delxBC = x[i3].x - x[i2].x; delyBC = x[i3].y - x[i2].y; delzBC = x[i3].z - x[i2].z; delxBD = x[i4].x - x[i2].x; delyBD = x[i4].y - x[i2].y; delzBD = x[i4].z - x[i2].z; // bond lengths rABmag2 = delxAB*delxAB + delyAB*delyAB + delzAB*delzAB; rAB = sqrt(rABmag2); rBCmag2 = delxBC*delxBC + delyBC*delyBC + delzBC*delzBC; rBC = sqrt(rBCmag2); rBDmag2 = delxBD*delxBD + delyBD*delyBD + delzBD*delzBD; rBD = sqrt(rBDmag2); // angle ABC, ABD, CBD costhABC = (delxAB*delxBC + delyAB*delyBC + delzAB*delzBC) / (rAB * rBC); if (costhABC > 1.0) costhABC = 1.0; if (costhABC < -1.0) costhABC = -1.0; thetaABC = acos(costhABC); costhABD = (delxAB*delxBD + delyAB*delyBD + delzAB*delzBD) / (rAB * rBD); if (costhABD > 1.0) costhABD = 1.0; if (costhABD < -1.0) costhABD = -1.0; thetaABD = acos(costhABD); costhCBD = (delxBC*delxBD + delyBC*delyBD + delzBC*delzBD) /(rBC * rBD); if (costhCBD > 1.0) costhCBD = 1.0; if (costhCBD < -1.0) costhCBD = -1.0; thetaCBD = acos(costhCBD); dthABC = thetaABC - aa_theta0_1[type]; dthABD = thetaABD - aa_theta0_2[type]; dthCBD = thetaCBD - aa_theta0_3[type]; // energy if (EFLAG) eimproper = aa_k2[type] * dthABC * dthABD + aa_k1[type] * dthABC * dthCBD + aa_k3[type] * dthABD * dthCBD; // d(theta)/d(r) array // angle i, atom j, coordinate k for (i = 0; i < 3; i++) for (j = 0; j < 4; j++) for (k = 0; k < 3; k++) dthetadr[i][j][k] = 0.0; // angle ABC sc1 = sqrt(1.0/(1.0 - costhABC*costhABC)); t1 = costhABC / rABmag2; t3 = costhABC / rBCmag2; r12 = 1.0 / (rAB * rBC); dthetadr[0][0][0] = sc1 * ((t1 * delxAB) - (delxBC * r12)); dthetadr[0][0][1] = sc1 * ((t1 * delyAB) - (delyBC * r12)); dthetadr[0][0][2] = sc1 * ((t1 * delzAB) - (delzBC * r12)); dthetadr[0][1][0] = sc1 * ((-t1 * delxAB) + (delxBC * r12) + (-t3 * delxBC) + (delxAB * r12)); dthetadr[0][1][1] = sc1 * ((-t1 * delyAB) + (delyBC * r12) + (-t3 * delyBC) + (delyAB * r12)); dthetadr[0][1][2] = sc1 * ((-t1 * delzAB) + (delzBC * r12) + (-t3 * delzBC) + (delzAB * r12)); dthetadr[0][2][0] = sc1 * ((t3 * delxBC) - (delxAB * r12)); dthetadr[0][2][1] = sc1 * ((t3 * delyBC) - (delyAB * r12)); dthetadr[0][2][2] = sc1 * ((t3 * delzBC) - (delzAB * r12)); // angle CBD sc1 = sqrt(1.0/(1.0 - costhCBD*costhCBD)); t1 = costhCBD / rBCmag2; t3 = costhCBD / rBDmag2; r12 = 1.0 / (rBC * rBD); dthetadr[1][2][0] = sc1 * ((t1 * delxBC) - (delxBD * r12)); dthetadr[1][2][1] = sc1 * ((t1 * delyBC) - (delyBD * r12)); dthetadr[1][2][2] = sc1 * ((t1 * delzBC) - (delzBD * r12)); dthetadr[1][1][0] = sc1 * ((-t1 * delxBC) + (delxBD * r12) + (-t3 * delxBD) + (delxBC * r12)); dthetadr[1][1][1] = sc1 * ((-t1 * delyBC) + (delyBD * r12) + (-t3 * delyBD) + (delyBC * r12)); dthetadr[1][1][2] = sc1 * ((-t1 * delzBC) + (delzBD * r12) + (-t3 * delzBD) + (delzBC * r12)); dthetadr[1][3][0] = sc1 * ((t3 * delxBD) - (delxBC * r12)); dthetadr[1][3][1] = sc1 * ((t3 * delyBD) - (delyBC * r12)); dthetadr[1][3][2] = sc1 * ((t3 * delzBD) - (delzBC * r12)); // angle ABD sc1 = sqrt(1.0/(1.0 - costhABD*costhABD)); t1 = costhABD / rABmag2; t3 = costhABD / rBDmag2; r12 = 1.0 / (rAB * rBD); dthetadr[2][0][0] = sc1 * ((t1 * delxAB) - (delxBD * r12)); dthetadr[2][0][1] = sc1 * ((t1 * delyAB) - (delyBD * r12)); dthetadr[2][0][2] = sc1 * ((t1 * delzAB) - (delzBD * r12)); dthetadr[2][1][0] = sc1 * ((-t1 * delxAB) + (delxBD * r12) + (-t3 * delxBD) + (delxAB * r12)); dthetadr[2][1][1] = sc1 * ((-t1 * delyAB) + (delyBD * r12) + (-t3 * delyBD) + (delyAB * r12)); dthetadr[2][1][2] = sc1 * ((-t1 * delzAB) + (delzBD * r12) + (-t3 * delzBD) + (delzAB * r12)); dthetadr[2][3][0] = sc1 * ((t3 * delxBD) - (delxAB * r12)); dthetadr[2][3][1] = sc1 * ((t3 * delyBD) - (delyAB * r12)); dthetadr[2][3][2] = sc1 * ((t3 * delzBD) - (delzAB * r12)); // angleangle forces for (i = 0; i < 4; i++) for (j = 0; j < 3; j++) fabcd[i][j] = - ((aa_k1[type] * (dthABC*dthetadr[1][i][j] + dthCBD*dthetadr[0][i][j])) + (aa_k2[type] * (dthABC*dthetadr[2][i][j] + dthABD*dthetadr[0][i][j])) + (aa_k3[type] * (dthABD*dthetadr[1][i][j] + dthCBD*dthetadr[2][i][j]))); // apply force to each of 4 atoms if (NEWTON_BOND || i1 < nlocal) { f[i1].x += fabcd[0][0]; f[i1].y += fabcd[0][1]; f[i1].z += fabcd[0][2]; } if (NEWTON_BOND || i2 < nlocal) { f[i2].x += fabcd[1][0]; f[i2].y += fabcd[1][1]; f[i2].z += fabcd[1][2]; } if (NEWTON_BOND || i3 < nlocal) { f[i3].x += fabcd[2][0]; f[i3].y += fabcd[2][1]; f[i3].z += fabcd[2][2]; } if (NEWTON_BOND || i4 < nlocal) { f[i4].x += fabcd[3][0]; f[i4].y += fabcd[3][1]; f[i4].z += fabcd[3][2]; } if (EVFLAG) ev_tally_thr(this,i1,i2,i3,i4,nlocal,NEWTON_BOND,eimproper, fabcd[0],fabcd[2],fabcd[3],delxAB,delyAB,delzAB, delxBC,delyBC,delzBC,delxBD,delyBD,delzBD,thr); } }