/* ---------------------------------------------------------------------- LAMMPS - Large-scale Atomic/Molecular Massively Parallel Simulator http://lammps.sandia.gov, Sandia National Laboratories Steve Plimpton, sjplimp@sandia.gov Copyright (2003) Sandia Corporation. Under the terms of Contract DE-AC04-94AL85000 with Sandia Corporation, the U.S. Government retains certain rights in this software. This software is distributed under the GNU General Public License. See the README file in the top-level LAMMPS directory. ------------------------------------------------------------------------- */ /* ---------------------------------------------------------------------- Contributing author: Sai Jayaraman (University of Notre Dame) ------------------------------------------------------------------------- */ #include "mpi.h" #include "string.h" #include "compute_ti.h" #include "update.h" #include "modify.h" #include "domain.h" #include "force.h" #include "pair.h" #include "kspace.h" #include "input.h" #include "variable.h" #include "error.h" using namespace LAMMPS_NS; enum{PAIR,TAIL,KSPACE}; /* ---------------------------------------------------------------------- */ ComputeTI::ComputeTI(LAMMPS *lmp, int narg, char **arg) : Compute(lmp, narg, arg) { if (narg < 4) error->all(FLERR,"Illegal compute ti command"); peflag = 1; scalar_flag = 1; extscalar = 1; timeflag = 1; // terms come in triplets nterms = (narg-3) / 3; if (narg != 3*nterms + 3) error->all(FLERR,"Illegal compute ti command"); which = new int[nterms]; ivar1 = new int[nterms]; ivar2 = new int[nterms]; var1 = new char*[nterms]; var2 = new char*[nterms]; pptr = new Pair*[nterms]; pstyle = new char*[nterms]; for (int m = 0; m < nterms; m++) pstyle[m] = NULL; // parse keywords nterms = 0; int iarg = 3; while (iarg < narg) { if (iarg+3 > narg) error->all(FLERR,"Illegal compute ti command"); if (strcmp(arg[iarg],"kspace") == 0) which[nterms] = KSPACE; else if (strcmp(arg[iarg],"tail") == 0) which[nterms] = TAIL; else { which[nterms] = PAIR; int n = strlen(arg[iarg]) + 1; pstyle[nterms] = new char[n]; strcpy(pstyle[nterms],arg[iarg]); } if (strstr(arg[iarg+1],"v_") == arg[iarg+1]) { int n = strlen(&arg[iarg+1][2]) + 1; var1[nterms] = new char[n]; strcpy(var1[nterms],&arg[iarg+1][2]); } else error->all(FLERR,"Illegal compute ti command"); if (strstr(arg[iarg+2],"v_") == arg[iarg+2]) { int n = strlen(&arg[iarg+2][2]) + 1; var2[nterms] = new char[n]; strcpy(var2[nterms],&arg[iarg+2][2]); } else error->all(FLERR,"Illegal compute ti command"); nterms++; iarg += 3; } } /* --------------------------------------------------------------------- */ ComputeTI::~ComputeTI() { for (int m = 0; m < nterms; m++) { delete [] var1[m]; delete [] var2[m]; delete [] pstyle[m]; } delete [] which; delete [] ivar1; delete [] ivar2; delete [] var1; delete [] var2; delete [] pptr; delete [] pstyle; } /* --------------------------------------------------------------------- */ void ComputeTI::init() { // setup and error checks for (int m = 0; m < nterms; m++) { ivar1[m] = input->variable->find(var1[m]); ivar2[m] = input->variable->find(var2[m]); if (ivar1[m] < 0 || ivar2 < 0) error->all(FLERR,"Variable name for compute ti does not exist"); if (!input->variable->equalstyle(ivar1[m]) || !input->variable->equalstyle(ivar2[m])) error->all(FLERR,"Variable for compute ti is invalid style"); if (which[m] == PAIR) { pptr[m] = force->pair_match(pstyle[m],1); if (pptr[m] == NULL) error->all(FLERR,"Compute ti pair style does not exist"); } else if (which[m] == TAIL) { if (force->pair == NULL || force->pair->tail_flag == 0) error->all(FLERR,"Compute ti tail when pair style does not " "compute tail corrections"); } else if (which[m] == KSPACE) { if (force->kspace == NULL) error->all(FLERR,"Compute ti kspace style does not exist"); } } } /* --------------------------------------------------------------------- */ double ComputeTI::compute_scalar() { double eng,engall,value1,value2; invoked_scalar = update->ntimestep; if (update->eflag_global != invoked_scalar) error->all(FLERR,"Energy was not tallied on needed timestep"); double dUdl = 0.0; for (int m = 0; m < nterms; m++) { value1 = input->variable->compute_equal(ivar1[m]); value2 = input->variable->compute_equal(ivar2[m]); if (value1 == 0.0) continue; if (which[m] == PAIR) { eng = pptr[m]->eng_vdwl + pptr[m]->eng_coul; MPI_Allreduce(&eng,&engall,1,MPI_DOUBLE,MPI_SUM,world); dUdl += engall/value1 * value2; } else if (which[m] == TAIL) { double vol = domain->xprd*domain->yprd*domain->zprd; eng = force->pair->etail / vol; dUdl += eng/value1 * value2; } else if (which[m] == KSPACE) { eng = force->kspace->energy; dUdl += eng/value1 * value2; } } scalar = dUdl; return scalar; }