/* ---------------------------------------------------------------------- LAMMPS - Large-scale Atomic/Molecular Massively Parallel Simulator http://lammps.sandia.gov, Sandia National Laboratories Steve Plimpton, sjplimp@sandia.gov Copyright (2003) Sandia Corporation. Under the terms of Contract DE-AC04-94AL85000 with Sandia Corporation, the U.S. Government retains certain rights in this software. This software is distributed under the GNU General Public License. See the README file in the top-level LAMMPS directory. ------------------------------------------------------------------------- */ #include "kokkos.h" #include #include #include #include #include #include #include #include "lammps.h" #include "force.h" #include "neighbor_kokkos.h" #include "neigh_list_kokkos.h" #include "error.h" #include "memory_kokkos.h" #ifdef KOKKOS_ENABLE_CUDA // for detecting CUDA-aware MPI support: // the variable int have_cuda_aware // - is 1 if CUDA-aware MPI support is available // - is 0 if CUDA-aware MPI support is unavailable // - is -1 if CUDA-aware MPI support is unknown #define CUDA_AWARE_UNKNOWN static int have_cuda_aware = -1; // OpenMPI supports detecting CUDA-aware MPI as of version 2.0.0 #if (OPEN_MPI) #if (OMPI_MAJOR_VERSION >= 2) #include #if defined(MPIX_CUDA_AWARE_SUPPORT) && MPIX_CUDA_AWARE_SUPPORT static int have_cuda_aware = 1; #elif defined(MPIX_CUDA_AWARE_SUPPORT) && !MPIX_CUDA_AWARE_SUPPORT static int have_cuda_aware = 0; #else CUDA_AWARE_UNKNOWN #endif // defined(MPIX_CUDA_AWARE_SUPPORT) #else // old OpenMPI CUDA_AWARE_UNKNOWN #endif // (OMPI_MAJOR_VERSION >=2) #else // unknown MPI library CUDA_AWARE_UNKNOWN #endif // OPEN_MPI #endif // KOKKOS_ENABLE_CUDA using namespace LAMMPS_NS; /* ---------------------------------------------------------------------- */ KokkosLMP::KokkosLMP(LAMMPS *lmp, int narg, char **arg) : Pointers(lmp) { kokkos_exists = 1; lmp->kokkos = this; exchange_comm_changed = 0; forward_comm_changed = 0; reverse_comm_changed = 0; delete memory; memory = new MemoryKokkos(lmp); memoryKK = (MemoryKokkos*) memory; auto_sync = 1; int me = 0; MPI_Comm_rank(world,&me); if (me == 0) error->message(FLERR,"KOKKOS mode is enabled"); // process any command-line args that invoke Kokkos settings ngpus = 0; int device = 0; nthreads = 1; numa = 1; int iarg = 0; while (iarg < narg) { if (strcmp(arg[iarg],"d") == 0 || strcmp(arg[iarg],"device") == 0) { if (iarg+2 > narg) error->all(FLERR,"Invalid Kokkos command-line args"); device = atoi(arg[iarg+1]); iarg += 2; } else if (strcmp(arg[iarg],"g") == 0 || strcmp(arg[iarg],"gpus") == 0) { #ifndef LMP_KOKKOS_GPU error->all(FLERR,"GPUs are requested but Kokkos has not been compiled for CUDA or HIP"); #endif if (iarg+2 > narg) error->all(FLERR,"Invalid Kokkos command-line args"); ngpus = atoi(arg[iarg+1]); int skip_gpu = 9999; if (iarg+2 < narg && isdigit(arg[iarg+2][0])) { skip_gpu = atoi(arg[iarg+2]); iarg++; } iarg += 2; int set_flag = 0; char *str; if ((str = getenv("SLURM_LOCALID"))) { int local_rank = atoi(str); device = local_rank % ngpus; if (device >= skip_gpu) device++; set_flag = 1; } if ((str = getenv("MPT_LRANK"))) { int local_rank = atoi(str); device = local_rank % ngpus; if (device >= skip_gpu) device++; set_flag = 1; } if ((str = getenv("MV2_COMM_WORLD_LOCAL_RANK"))) { int local_rank = atoi(str); device = local_rank % ngpus; if (device >= skip_gpu) device++; set_flag = 1; } if ((str = getenv("OMPI_COMM_WORLD_LOCAL_RANK"))) { int local_rank = atoi(str); device = local_rank % ngpus; if (device >= skip_gpu) device++; set_flag = 1; } if (ngpus > 1 && !set_flag) error->all(FLERR,"Could not determine local MPI rank for multiple " "GPUs with Kokkos CUDA because MPI library not recognized"); } else if (strcmp(arg[iarg],"t") == 0 || strcmp(arg[iarg],"threads") == 0) { nthreads = atoi(arg[iarg+1]); iarg += 2; } else if (strcmp(arg[iarg],"n") == 0 || strcmp(arg[iarg],"numa") == 0) { numa = atoi(arg[iarg+1]); iarg += 2; } else error->all(FLERR,"Invalid Kokkos command-line args"); } // initialize Kokkos if (me == 0) { if (screen) fprintf(screen," will use up to %d GPU(s) per node\n",ngpus); if (logfile) fprintf(logfile," will use up to %d GPU(s) per node\n",ngpus); } #ifdef LMP_KOKKOS_GPU if (ngpus <= 0) error->all(FLERR,"Kokkos has been compiled for CUDA or HIP but no GPUs are requested"); #endif #ifndef KOKKOS_ENABLE_SERIAL if (nthreads == 1 && me == 0) error->warning(FLERR,"When using a single thread, the Kokkos Serial backend " "(i.e. Makefile.kokkos_mpi_only) gives better performance " "than the OpenMP backend"); #endif Kokkos::InitArguments args; args.num_threads = nthreads; args.num_numa = numa; args.device_id = device; Kokkos::initialize(args); // default settings for package kokkos command binsize = 0.0; #ifdef KOKKOS_ENABLE_CUDA cuda_aware_flag = 1; #else cuda_aware_flag = 0; #endif neigh_thread = 0; neigh_thread_set = 0; neighflag_qeq_set = 0; if (ngpus > 0) { neighflag = FULL; neighflag_qeq = FULL; newtonflag = 0; exchange_comm_classic = forward_comm_classic = reverse_comm_classic = 0; exchange_comm_on_host = forward_comm_on_host = reverse_comm_on_host = 0; } else { if (nthreads > 1) { neighflag = HALFTHREAD; neighflag_qeq = HALFTHREAD; } else { neighflag = HALF; neighflag_qeq = HALF; } newtonflag = 1; exchange_comm_classic = forward_comm_classic = reverse_comm_classic = 1; exchange_comm_on_host = forward_comm_on_host = reverse_comm_on_host = 0; } #ifdef KOKKOS_ENABLE_CUDA // check and warn about CUDA-aware MPI availability when using multiple MPI tasks // change default only if we can safely detect that CUDA-aware MPI is not available int nmpi = 0; MPI_Comm_size(world,&nmpi); if (nmpi > 1) { #if defined(MPI_VERSION) && (MPI_VERSION > 2) // Check for IBM Spectrum MPI int len; char mpi_version[MPI_MAX_LIBRARY_VERSION_STRING]; MPI_Get_library_version(mpi_version, &len); if (strstr(&mpi_version[0], "Spectrum") != NULL) { cuda_aware_flag = 0; char* str; if (str = getenv("OMPI_MCA_pml_pami_enable_cuda")) if((strcmp(str,"1") == 0)) { have_cuda_aware = 1; cuda_aware_flag = 1; } if (!cuda_aware_flag) if (me == 0) error->warning(FLERR,"The Spectrum MPI '-gpu' flag is not set. Disabling CUDA-aware MPI"); } #endif if (cuda_aware_flag == 1 && have_cuda_aware == 0) { if (me == 0) error->warning(FLERR,"Turning off CUDA-aware MPI since it is not detected, " "use '-pk kokkos cuda/aware on' to override"); cuda_aware_flag = 0; } else if (have_cuda_aware == -1) { // maybe we are dealing with MPICH, MVAPICH2 or some derivative? // MVAPICH2 #if defined(MPICH) && defined(MVAPICH2_VERSION) char* str; cuda_aware_flag = 0; if ((str = getenv("MV2_USE_CUDA"))) if ((strcmp(str,"1") == 0)) cuda_aware_flag = 1; if (!cuda_aware_flag) if (me == 0) error->warning(FLERR,"MVAPICH2 'MV2_USE_CUDA' environment variable is not set. Disabling CUDA-aware MPI"); // pure MPICH or some unsupported MPICH derivative #elif defined(MPICH) && !defined(MVAPICH2_VERSION) if (me == 0) error->warning(FLERR,"Detected MPICH. Disabling CUDA-aware MPI"); cuda_aware_flag = 0; #else if (me == 0) error->warning(FLERR,"Kokkos with CUDA assumes CUDA-aware MPI is available," " but cannot determine if this is the case\n try" " '-pk kokkos cuda/aware off' if getting segmentation faults"); #endif } // if (-1 == have_cuda_aware) } // nmpi > 0 #endif // KOKKOS_ENABLE_CUDA #ifdef KILL_KOKKOS_ON_SIGSEGV signal(SIGSEGV, my_signal_handler); #endif } /* ---------------------------------------------------------------------- */ KokkosLMP::~KokkosLMP() { // finalize Kokkos Kokkos::finalize(); } /* ---------------------------------------------------------------------- invoked by package kokkos command ------------------------------------------------------------------------- */ void KokkosLMP::accelerator(int narg, char **arg) { int iarg = 0; while (iarg < narg) { if (strcmp(arg[iarg],"neigh") == 0) { if (iarg+2 > narg) error->all(FLERR,"Illegal package kokkos command"); if (strcmp(arg[iarg+1],"full") == 0) neighflag = FULL; else if (strcmp(arg[iarg+1],"half") == 0) { if (nthreads > 1 || ngpus > 0) neighflag = HALFTHREAD; else neighflag = HALF; } else error->all(FLERR,"Illegal package kokkos command"); if (!neighflag_qeq_set) neighflag_qeq = neighflag; iarg += 2; } else if (strcmp(arg[iarg],"neigh/qeq") == 0) { if (iarg+2 > narg) error->all(FLERR,"Illegal package kokkos command"); if (strcmp(arg[iarg+1],"full") == 0) neighflag_qeq = FULL; else if (strcmp(arg[iarg+1],"half") == 0) { if (nthreads > 1 || ngpus > 0) neighflag_qeq = HALFTHREAD; else neighflag_qeq = HALF; } else error->all(FLERR,"Illegal package kokkos command"); neighflag_qeq_set = 1; iarg += 2; } else if (strcmp(arg[iarg],"binsize") == 0) { if (iarg+2 > narg) error->all(FLERR,"Illegal package kokkos command"); binsize = force->numeric(FLERR,arg[iarg+1]); iarg += 2; } else if (strcmp(arg[iarg],"newton") == 0) { if (iarg+2 > narg) error->all(FLERR,"Illegal package kokkos command"); if (strcmp(arg[iarg+1],"off") == 0) newtonflag = 0; else if (strcmp(arg[iarg+1],"on") == 0) newtonflag = 1; else error->all(FLERR,"Illegal package kokkos command"); iarg += 2; } else if (strcmp(arg[iarg],"comm") == 0) { if (iarg+2 > narg) error->all(FLERR,"Illegal package kokkos command"); if (strcmp(arg[iarg+1],"no") == 0) { exchange_comm_classic = forward_comm_classic = reverse_comm_classic = 1; exchange_comm_on_host = forward_comm_on_host = reverse_comm_on_host = 0; } else if (strcmp(arg[iarg+1],"host") == 0) { exchange_comm_classic = forward_comm_classic = reverse_comm_classic = 0; exchange_comm_on_host = forward_comm_on_host = reverse_comm_on_host = 1; } else if (strcmp(arg[iarg+1],"device") == 0) { exchange_comm_classic = forward_comm_classic = reverse_comm_classic = 0; exchange_comm_on_host = forward_comm_on_host = reverse_comm_on_host = 0; } else error->all(FLERR,"Illegal package kokkos command"); iarg += 2; } else if (strcmp(arg[iarg],"comm/exchange") == 0) { if (iarg+2 > narg) error->all(FLERR,"Illegal package kokkos command"); if (strcmp(arg[iarg+1],"no") == 0) exchange_comm_classic = 1; else if (strcmp(arg[iarg+1],"host") == 0) { exchange_comm_classic = 0; exchange_comm_on_host = 1; } else if (strcmp(arg[iarg+1],"device") == 0) { exchange_comm_classic = 0; exchange_comm_on_host = 0; } else error->all(FLERR,"Illegal package kokkos command"); exchange_comm_changed = 0; iarg += 2; } else if (strcmp(arg[iarg],"comm/forward") == 0) { if (iarg+2 > narg) error->all(FLERR,"Illegal package kokkos command"); if (strcmp(arg[iarg+1],"no") == 0) forward_comm_classic = 1; else if (strcmp(arg[iarg+1],"host") == 0) { forward_comm_classic = 0; forward_comm_on_host = 1; } else if (strcmp(arg[iarg+1],"device") == 0) { forward_comm_classic = 0; forward_comm_on_host = 0; } else error->all(FLERR,"Illegal package kokkos command"); forward_comm_changed = 0; iarg += 2; } else if (strcmp(arg[iarg],"comm/reverse") == 0) { if (iarg+2 > narg) error->all(FLERR,"Illegal package kokkos command"); if (strcmp(arg[iarg+1],"no") == 0) reverse_comm_classic = 1; else if (strcmp(arg[iarg+1],"host") == 0) { reverse_comm_classic = 0; reverse_comm_on_host = 1; } else if (strcmp(arg[iarg+1],"device") == 0) { reverse_comm_classic = 0; reverse_comm_on_host = 0; } else error->all(FLERR,"Illegal package kokkos command"); reverse_comm_changed = 0; iarg += 2; } else if (strcmp(arg[iarg],"cuda/aware") == 0) { if (iarg+2 > narg) error->all(FLERR,"Illegal package kokkos command"); if (strcmp(arg[iarg+1],"off") == 0) cuda_aware_flag = 0; else if (strcmp(arg[iarg+1],"on") == 0) cuda_aware_flag = 1; else error->all(FLERR,"Illegal package kokkos command"); iarg += 2; } else if (strcmp(arg[iarg],"neigh/thread") == 0) { if (iarg+2 > narg) error->all(FLERR,"Illegal package kokkos command"); if (strcmp(arg[iarg+1],"off") == 0) neigh_thread = 0; else if (strcmp(arg[iarg+1],"on") == 0) neigh_thread = 1; else error->all(FLERR,"Illegal package kokkos command"); neigh_thread_set = 1; iarg += 2; } else error->all(FLERR,"Illegal package kokkos command"); } #ifdef KOKKOS_ENABLE_CUDA int nmpi = 0; MPI_Comm_size(world,&nmpi); // if "cuda/aware off" and "comm device", change to "comm host" if (!cuda_aware_flag && nmpi > 1) { if (exchange_comm_classic == 0 && exchange_comm_on_host == 0) { exchange_comm_on_host = 1; exchange_comm_changed = 1; } if (forward_comm_classic == 0 && forward_comm_on_host == 0) { forward_comm_on_host = 1; forward_comm_changed = 1; } if (reverse_comm_classic == 0 && reverse_comm_on_host == 0) { reverse_comm_on_host = 1; reverse_comm_changed = 1; } } // if "cuda/aware on" and comm flags were changed previously, change them back if (cuda_aware_flag) { if (exchange_comm_changed) { exchange_comm_on_host = 0; exchange_comm_changed = 0; } if (forward_comm_changed) { forward_comm_on_host = 0; forward_comm_changed = 0; } if (reverse_comm_changed) { reverse_comm_on_host = 0; reverse_comm_changed = 0; } } #endif // set newton flags // set neighbor binsize, same as neigh_modify command force->newton = force->newton_pair = force->newton_bond = newtonflag; if (neigh_thread && neighflag != FULL) error->all(FLERR,"Must use KOKKOS package option 'neigh full' with 'neigh/thread on'"); neighbor->binsize_user = binsize; if (binsize <= 0.0) neighbor->binsizeflag = 0; else neighbor->binsizeflag = 1; } /* ---------------------------------------------------------------------- called by Finish ------------------------------------------------------------------------- */ int KokkosLMP::neigh_count(int m) { int inum; int nneigh = 0; ArrayTypes::t_int_1d h_ilist; ArrayTypes::t_int_1d h_numneigh; NeighborKokkos *nk = (NeighborKokkos *) neighbor; if (nk->lists[m]->execution_space == Host) { NeighListKokkos* nlistKK = (NeighListKokkos*) nk->lists[m]; inum = nlistKK->inum; #ifndef KOKKOS_USE_CUDA_UVM h_ilist = Kokkos::create_mirror_view(nlistKK->d_ilist); h_numneigh = Kokkos::create_mirror_view(nlistKK->d_numneigh); #else h_ilist = nlistKK->d_ilist; h_numneigh = nlistKK->d_numneigh; #endif Kokkos::deep_copy(h_ilist,nlistKK->d_ilist); Kokkos::deep_copy(h_numneigh,nlistKK->d_numneigh); } else if (nk->lists[m]->execution_space == Device) { NeighListKokkos* nlistKK = (NeighListKokkos*) nk->lists[m]; inum = nlistKK->inum; #ifndef KOKKOS_USE_CUDA_UVM h_ilist = Kokkos::create_mirror_view(nlistKK->d_ilist); h_numneigh = Kokkos::create_mirror_view(nlistKK->d_numneigh); #else h_ilist = nlistKK->d_ilist; h_numneigh = nlistKK->d_numneigh; #endif Kokkos::deep_copy(h_ilist,nlistKK->d_ilist); Kokkos::deep_copy(h_numneigh,nlistKK->d_numneigh); } for (int i = 0; i < inum; i++) nneigh += h_numneigh[h_ilist[i]]; return nneigh; } void KokkosLMP::my_signal_handler(int sig) { if (sig == SIGSEGV) { kill(getpid(),SIGABRT); } }