LAMMPS (18 Feb 2013) # GI-System units metal newton off package gpu force/neigh 0 1 1 atom_style charge read_data data.phosphate orthogonal box = (33.0201 33.0201 33.0201) to (86.9799 86.9799 86.9799) 1 by 1 by 1 MPI processor grid 10950 atoms 10950 velocities replicate 3 3 3 orthogonal box = (33.0201 33.0201 33.0201) to (194.899 194.899 194.899) 1 by 1 by 1 MPI processor grid 295650 atoms pair_style lj/cut/coul/long/gpu 15.0 pair_coeff 1 1 0.0 0.29 pair_coeff 1 2 0.0 0.29 pair_coeff 1 3 0.000668 2.5738064 pair_coeff 2 2 0.0 0.29 pair_coeff 2 3 0.004251 1.91988674 pair_coeff 3 3 0.012185 2.91706967 kspace_style pppm/gpu 1e-5 neighbor 2.0 bin thermo 100 timestep 0.001 fix 1 all npt temp 400 400 0.01 iso 1000.0 1000.0 1.0 run 200 PPPM initialization ... G vector (1/distance) = 0.210051 grid = 108 108 108 stencil order = 5 estimated absolute RMS force accuracy = 0.000178801 estimated relative force accuracy = 1.24171e-05 using double precision FFTs 3d grid and FFT values/proc = 1520875 1259712 Memory usage per processor = 266.927 Mbytes Step Temp E_pair E_mol TotEng Press Volume 0 400.30257 -2381941.6 0 -2366643.8 -449.97088 4242016.4 100 411.69681 -2392428.5 0 -2376695.3 7046.6795 4308883.5 200 401.284 -2394152.5 0 -2378817.2 3243.274 4334284.4 Loop time of 156.48 on 1 procs for 200 steps with 295650 atoms Pair time (%) = 12.2461 (7.82602) Kspce time (%) = 81.8041 (52.2777) Neigh time (%) = 0.0129185 (0.00825567) Comm time (%) = 0.346706 (0.221566) Outpt time (%) = 0.00171018 (0.0010929) Other time (%) = 62.0683 (39.6654) FFT time (% of Kspce) = 57.1943 (69.9162) FFT Gflps 3d (1d only) = 1.23749 2.95335 Nlocal: 295650 ave 295650 max 295650 min Histogram: 1 0 0 0 0 0 0 0 0 0 Nghost: 226982 ave 226982 max 226982 min Histogram: 1 0 0 0 0 0 0 0 0 0 Neighs: 0 ave 0 max 0 min Histogram: 1 0 0 0 0 0 0 0 0 0 Total # of neighbors = 0 Ave neighs/atom = 0 Neighbor list builds = 6 Dangerous builds = 0 unfix 1