// clang-format off /* ---------------------------------------------------------------------- LAMMPS - Large-scale Atomic/Molecular Massively Parallel Simulator https://www.lammps.org/, Sandia National Laboratories Steve Plimpton, sjplimp@sandia.gov Copyright (2003) Sandia Corporation. Under the terms of Contract DE-AC04-94AL85000 with Sandia Corporation, the U.S. Government retains certain rights in this software. This software is distributed under the GNU General Public License. See the README file in the top-level LAMMPS directory. ------------------------------------------------------------------------- */ /* ---------------------------------------------------------------------- Contributing author: Mike Brown (ORNL) ------------------------------------------------------------------------- */ #include "pair_sw_gpu.h" #include "atom.h" #include "comm.h" #include "domain.h" #include "error.h" #include "force.h" #include "gpu_extra.h" #include "memory.h" #include "neigh_list.h" #include "neigh_request.h" #include "neighbor.h" #include "suffix.h" using namespace LAMMPS_NS; // External functions from cuda library for atom decomposition int sw_gpu_init(const int ntypes, const int inum, const int nall, const int max_nbors, const double cell_size, int &gpu_mode, FILE *screen, double **ncutsq, double **ncut, double **sigma, double **powerp, double **powerq, double **sigma_gamma, double **c1, double **c2, double **c3,double **c4, double **c5, double **c6, double ***lambda_epsilon, double ***costheta, const int *map, int ***e2param); void sw_gpu_clear(); int ** sw_gpu_compute_n(const int ago, const int inum, const int nall, double **host_x, int *host_type, double *sublo, double *subhi, tagint *tag, int **nspecial, tagint **special, const bool eflag, const bool vflag, const bool eatom, const bool vatom, int &host_start, int **ilist, int **jnum, const double cpu_time, bool &success); void sw_gpu_compute(const int ago, const int nloc, const int nall, const int ln, double **host_x, int *host_type, int *ilist, int *numj, int **firstneigh, const bool eflag, const bool vflag, const bool eatom, const bool vatom, int &host_start, const double cpu_time, bool &success); double sw_gpu_bytes(); #define MAXLINE 1024 #define DELTA 4 /* ---------------------------------------------------------------------- */ PairSWGPU::PairSWGPU(LAMMPS *lmp) : PairSW(lmp), gpu_mode(GPU_FORCE) { cpu_time = 0.0; reinitflag = 0; suffix_flag |= Suffix::GPU; GPU_EXTRA::gpu_ready(lmp->modify, lmp->error); cutghost = nullptr; ghostneigh = 1; } /* ---------------------------------------------------------------------- check if allocated, since class can be destructed when incomplete ------------------------------------------------------------------------- */ PairSWGPU::~PairSWGPU() { sw_gpu_clear(); if (allocated) memory->destroy(cutghost); } /* ---------------------------------------------------------------------- */ void PairSWGPU::compute(int eflag, int vflag) { ev_init(eflag,vflag); int nall = atom->nlocal + atom->nghost; int inum, host_start; bool success = true; int *ilist, *numneigh, **firstneigh; if (gpu_mode != GPU_FORCE) { double sublo[3],subhi[3]; if (domain->triclinic == 0) { sublo[0] = domain->sublo[0]; sublo[1] = domain->sublo[1]; sublo[2] = domain->sublo[2]; subhi[0] = domain->subhi[0]; subhi[1] = domain->subhi[1]; subhi[2] = domain->subhi[2]; } else { domain->bbox(domain->sublo_lamda,domain->subhi_lamda,sublo,subhi); } inum = atom->nlocal; firstneigh = sw_gpu_compute_n(neighbor->ago, inum, nall, atom->x, atom->type, sublo, subhi, atom->tag, atom->nspecial, atom->special, eflag, vflag, eflag_atom, vflag_atom, host_start, &ilist, &numneigh, cpu_time, success); } else { inum = list->inum; ilist = list->ilist; numneigh = list->numneigh; firstneigh = list->firstneigh; sw_gpu_compute(neighbor->ago, inum, nall, inum+list->gnum, atom->x, atom->type, ilist, numneigh, firstneigh, eflag, vflag, eflag_atom, vflag_atom, host_start, cpu_time, success); } if (!success) error->one(FLERR,"Insufficient memory on accelerator"); } /* ---------------------------------------------------------------------- */ void PairSWGPU::allocate() { PairSW::allocate(); int n = atom->ntypes; memory->create(cutghost,n+1,n+1,"pair:cutghost"); } /* ---------------------------------------------------------------------- init specific to this pair style ------------------------------------------------------------------------- */ void PairSWGPU::init_style() { double cell_size = cutmax + neighbor->skin; if (atom->tag_enable == 0) error->all(FLERR,"Pair style sw/gpu requires atom IDs"); if (force->newton_pair != 0) error->all(FLERR,"Pair style sw/gpu requires newton pair off"); double **c1, **c2, **c3, **c4, **c5, **c6; double **ncutsq, **ncut, **sigma, **powerp, **powerq, **sigma_gamma; double ***lambda_epsilon, ***costheta; c1 = c2 = c3 = c4 = c5 = c6 = nullptr; ncutsq = ncut = sigma = powerp = powerq = sigma_gamma = nullptr; lambda_epsilon = costheta = nullptr; const int tp1 = atom->ntypes + 1; memory->create(ncutsq, tp1, tp1, "pair:ncutsq"); memory->create(ncut, tp1, tp1, "pair:ncut"); memory->create(sigma, tp1, tp1, "pair:sigma"); memory->create(powerp, tp1, tp1, "pair:powerp"); memory->create(powerq, tp1, tp1, "pair:powerq"); memory->create(sigma_gamma, tp1, tp1, "pair:sigma_gamma"); memory->create(c1, tp1, tp1, "pair:c1"); memory->create(c2, tp1, tp1, "pair:c2"); memory->create(c3, tp1, tp1, "pair:c3"); memory->create(c4, tp1, tp1, "pair:c4"); memory->create(c5, tp1, tp1, "pair:c5"); memory->create(c6, tp1, tp1, "pair:c6"); memory->create(lambda_epsilon, tp1, tp1, tp1, "pair:lambda_epsilon"); memory->create(costheta, tp1, tp1, tp1, "pair:costheta"); for (int ii = 1; ii < tp1; ii++) { int i = map[ii]; for (int jj = 1; jj < tp1; jj++) { int j = map[jj]; if (i < 0 || j < 0) continue; else { int ijparam = elem3param[i][j][j]; ncutsq[ii][jj] = params[ijparam].cutsq; ncut[ii][jj] = params[ijparam].cut; sigma[ii][jj] = params[ijparam].sigma; powerp[ii][jj] = params[ijparam].powerp; powerq[ii][jj] = params[ijparam].powerq; sigma_gamma[ii][jj] = params[ijparam].sigma_gamma; c1[ii][jj] = params[ijparam].c1; c2[ii][jj] = params[ijparam].c2; c3[ii][jj] = params[ijparam].c3; c4[ii][jj] = params[ijparam].c4; c5[ii][jj] = params[ijparam].c5; c6[ii][jj] = params[ijparam].c6; } for (int kk = 1; kk < tp1; kk++) { int k = map[kk]; if (k < 0) continue; else { int ijkparam = elem3param[i][j][k]; costheta[ii][jj][kk] = params[ijkparam].costheta; lambda_epsilon[ii][jj][kk] = params[ijkparam].lambda_epsilon; } } } } int mnf = 5e-2 * neighbor->oneatom; int success = sw_gpu_init(tp1, atom->nlocal, atom->nlocal+atom->nghost, mnf, cell_size, gpu_mode, screen, ncutsq, ncut, sigma, powerp, powerq, sigma_gamma, c1, c2, c3, c4, c5, c6, lambda_epsilon, costheta, map, elem3param); memory->destroy(ncutsq); memory->destroy(ncut); memory->destroy(sigma); memory->destroy(powerp); memory->destroy(powerq); memory->destroy(sigma_gamma); memory->destroy(c1); memory->destroy(c2); memory->destroy(c3); memory->destroy(c4); memory->destroy(c5); memory->destroy(c6); memory->destroy(lambda_epsilon); memory->destroy(costheta); GPU_EXTRA::check_flag(success,error,world); if (gpu_mode == GPU_FORCE) { int irequest = neighbor->request(this,instance_me); neighbor->requests[irequest]->half = 0; neighbor->requests[irequest]->full = 1; neighbor->requests[irequest]->ghost = 1; } if (comm->cutghostuser < (2.0*cutmax + neighbor->skin)) { comm->cutghostuser=2.0*cutmax + neighbor->skin; if (comm->me == 0) error->warning(FLERR,"Increasing communication cutoff for GPU style"); } } /* ---------------------------------------------------------------------- init for one type pair i,j and corresponding j,i ------------------------------------------------------------------------- */ double PairSWGPU::init_one(int i, int j) { if (setflag[i][j] == 0) error->all(FLERR,"All pair coeffs are not set"); cutghost[i][j] = cutmax; cutghost[j][i] = cutmax; return cutmax; }