# Bulk polyelectrolyte as described in section IV of J. Chem. Phys. 125, 224107 (2006) boundary p p p units lj atom_style charge region my_sim_box block 0.0 10.0 0.0 10.0 0.0 10.0 create_box 3 my_sim_box create_atoms 1 random 2804 100 my_sim_box create_atoms 2 random 98 200 my_sim_box create_atoms 3 random 98 300 my_sim_box set type 2 charge -1.0 set type 3 charge 1.0 comm_modify mode single vel yes mass 1 1.0 mass 2 1.0 mass 3 1.0 pair_style hybrid/overlay dpd 1.0 1.0 245455 coul/slater/long 0.929 3.0 pair_coeff * * dpd 25.0 4.5 pair_coeff * * coul/slater/long kspace_style ewald 0.00001 dielectric 1.0 neighbor 2.0 bin neigh_modify every 1 delay 0 check no once no timestep 0.02 fix 2 all nve thermo 10 thermo_style custom step spcpu temp press etotal pe ke ecoul elong evdwl thermo_modify line one run 100000 write_data data.after_equilibration compute RDF_1_1 all rdf 50 1 1 cutoff 3.0 compute RDF_1_2 all rdf 50 1 2 cutoff 3.0 compute RDF_1_3 all rdf 50 1 3 cutoff 3.0 compute RDF_2_2 all rdf 50 2 2 cutoff 3.0 compute RDF_2_3 all rdf 50 2 3 cutoff 3.0 compute RDF_3_3 all rdf 50 3 3 cutoff 3.0 fix 11 all ave/time 50 1 50 c_RDF_1_1[*] file tmp_1_1.rdf mode vector fix 12 all ave/time 50 1 50 c_RDF_1_2[*] file tmp_1_2.rdf mode vector fix 13 all ave/time 50 1 50 c_RDF_1_3[*] file tmp_1_3.rdf mode vector fix 14 all ave/time 50 1 50 c_RDF_2_2[*] file tmp_2_2.rdf mode vector fix 15 all ave/time 50 1 50 c_RDF_2_3[*] file tmp_2_3.rdf mode vector fix 16 all ave/time 50 1 50 c_RDF_3_3[*] file tmp_3_3.rdf mode vector run 10000 write_data data.after_production_run