BootStrap: docker
From: ubuntu:16.04

%post
    export DEBIAN_FRONTEND=noninteractive
    apt-get update
    apt-get upgrade --no-install-recommends -y
    apt-get install --no-install-recommends -y \
        bc build-essential curl doxygen vim-nox wget \
        make cmake cmake-curses-gui ninja-build git \
        rsync ssh less \
        ccache gcc g++ gfortran \
        mpi-default-bin mpi-default-dev \
        libfftw3-dev libjpeg-dev libpng12-dev libblas-dev liblapack-dev \
        python-dev libeigen3-dev libgsl-dev libopenblas-dev libreadline-dev \
        virtualenv python3-dev python3-pip python3-pkg-resources \
        python3-setuptools python3-virtualenv python3-venv \
        enchant

        # create missing readline pkgconfig file
        cat > /usr/lib/x86_64-linux-gnu/pkgconfig/readline.pc <<EOF
prefix=/usr
exec_prefix=/usr
libdir=/usr/lib/x86_64-linux-gnu
includedir=/usr/include

Name: Readline
Description: GNU Readline library for command line editing
URL: http://tiswww.cwru.edu/php/chet/readline/rltop.html
Version: 6.3
Requires.private: tinfo
Libs: -L\${libdir} -lreadline
Cflags: -I\${includedir}/readline
EOF
        # set custom prompt indicating the container name
        CUSTOM_PROMPT_ENV=/.singularity.d/env/99-zz_custom_prompt.sh
        cat >$CUSTOM_PROMPT_ENV <<EOF
#!/bin/bash
PS1="[ubuntu16.04:\u@\h] \W> "
EOF
        chmod 755 $CUSTOM_PROMPT_ENV

%environment
        LC_ALL=C
        export LC_ALL
        # tell OpenMPI to not try using Infiniband
        OMPI_MCA_btl="^openib"
        # do not warn about unused components as this messes up testing
        OMPI_MCA_btl_base_warn_component_unused="0"
        export OMPI_MCA_btl OMPI_MCA_btl_base_warn_component_unused

%labels
        Author akohlmey, rbberger