# simulation of liquid argon with an electrostatic potential
#
# p | free | free |  fixed | p
# real units:
# distance = Angstroms
# time = femtoseconds
# mass = grams/mole
# energy = Kcal/mole
# 1 kilocalorie = 4184 Joules
# mvv2e = 2390.057361533490 [g/mol A^2/fs^2] -> [kcal/mol]
echo both
units     	real
atom_style full
########### BEGIN PARAMETERS ####################################
variable 	T equal 115.607
print 	"reference temperature $T [K]"
variable  a equal 5.719025032  
variable  i equal 1
variable  s equal 100
variable dt equal 4.0 
##############  END PARAMETERS #################################
dimension 	3
boundary  	f p p
pair_style  	lj/cut 13.0
lattice   	sc  $a 
region    	BOX     block  0 12 0 4 0 4
read_data	velocities.init
mass    	* 39.948
pair_coeff * * 0.2381 3.405
set group all charge 0.1
dielectric 80.0
timestep  	${dt}
neigh_modify every $i check no
thermo    	$s
# ------------- Equilibration and thermalisation ----------------
fix WALL all wall/reflect xlo EDGE xhi EDGE 
fix 		NVT all nvt temp $T $T 10 drag 0.2  
thermo_style 	custom step temp press etotal pe
#run 		400
unfix 		NVT
# ------------- Post processing ---------------------------------
fix        PP  all atc field
fix_modify PP  fields add mass_density charge_density electric_potential velocity
#fix_modify PP  mesh create 50 1 1 BOX f p p
fix_modify PP  mesh create 25 1 1 BOX f p p
#fix_modify PP  mesh create 6 1 1 BOX f p p
fix_modify PP  atom_element_map eulerian $i
# ------------- Coupling ----------------------------------------
fix        AtC all atc species_electrostatic     Ar_species.mat
fix_modify AtC add_species ALL group all 
fix_modify AtC internal_quadrature off
fix_modify AtC mesh create 6 1 1 BOX f p p
fix_modify AtC atom_element_map eulerian $i
fix_modify AtC extrinsic short_range off
fix_modify AtC mesh create_nodeset rbc 12. 12. -INF INF -INF INF
fix_modify AtC mesh create_nodeset lbc  0.  0. -INF INF -INF INF
# ------------- run ---------------------------------------------
thermo_style    custom step cpu etotal ke
fix_modify AtC output liquid_electrostaticFE $s full_text # binary
fix_modify PP  output liquid_electrostaticPP $s full_text
log liquid_electrostatic.log
fix_modify AtC  fix electric_potential lbc linear 0 0 0 0 0 0 0 
run 800