LAMMPS (10 Feb 2021) # 3d Lennard-Jones melt variable x index 1 variable y index 1 variable z index 1 variable xx equal 20*$x variable xx equal 20*1 variable yy equal 20*$y variable yy equal 20*1 variable zz equal 20*$z variable zz equal 20*1 units real lattice fcc 4.4300 Lattice spacing in x,y,z = 4.4300000 4.4300000 4.4300000 region box block 0 ${xx} 0 ${yy} 0 ${zz} region box block 0 20 0 ${yy} 0 ${zz} region box block 0 20 0 20 0 ${zz} region box block 0 20 0 20 0 20 create_box 1 box Created orthogonal box = (0.0000000 0.0000000 0.0000000) to (88.600000 88.600000 88.600000) 1 by 1 by 1 MPI processor grid create_atoms 1 box Created 32000 atoms create_atoms CPU = 0.002 seconds pair_style lj/cut 8.1500 pair_coeff 1 1 0.0104 3.4000 #pair_style kim LennardJones_Ar #pair_coeff * * Ar mass 1 39.95 velocity all create 200.0 232345 loop geom neighbor 0.3 bin neigh_modify delay 0 every 1 check yes fix 1 all nve #fix 1 all npt temp 1.0 1.0 1.0 iso 1.0 1.0 3.0 run 100 Neighbor list info ... update every 1 steps, delay 0 steps, check yes max neighbors/atom: 2000, page size: 100000 master list distance cutoff = 8.45 ghost atom cutoff = 8.45 binsize = 4.225, bins = 21 21 21 1 neighbor lists, perpetual/occasional/extra = 1 0 0 (1) pair lj/cut, perpetual attributes: half, newton on pair build: half/bin/atomonly/newton stencil: half/bin/3d/newton bin: standard Per MPI rank memory allocation (min/avg/max) = 19.23 | 19.23 | 19.23 Mbytes Step Temp E_pair E_mol TotEng Press 0 200 6290.8194 0 25367.408 6750.7421 100 98.747096 15900.676 0 25319.465 10184.453 Loop time of 1.87123 on 1 procs for 100 steps with 32000 atoms Performance: 4.617 ns/day, 5.198 hours/ns, 53.441 timesteps/s 99.9% CPU use with 1 MPI tasks x no OpenMP threads MPI task timing breakdown: Section | min time | avg time | max time |%varavg| %total --------------------------------------------------------------- Pair | 1.686 | 1.686 | 1.686 | 0.0 | 90.10 Neigh | 0.14211 | 0.14211 | 0.14211 | 0.0 | 7.59 Comm | 0.01013 | 0.01013 | 0.01013 | 0.0 | 0.54 Output | 6.3e-05 | 6.3e-05 | 6.3e-05 | 0.0 | 0.00 Modify | 0.022686 | 0.022686 | 0.022686 | 0.0 | 1.21 Other | | 0.0102 | | | 0.55 Nlocal: 32000.0 ave 32000 max 32000 min Histogram: 1 0 0 0 0 0 0 0 0 0 Nghost: 19911.0 ave 19911 max 19911 min Histogram: 1 0 0 0 0 0 0 0 0 0 Neighs: 1.96027e+06 ave 1.96027e+06 max 1.96027e+06 min Histogram: 1 0 0 0 0 0 0 0 0 0 Total # of neighbors = 1960266 Ave neighs/atom = 61.258313 Neighbor list builds = 3 Dangerous builds = 0 Total wall time: 0:00:01