/* ---------------------------------------------------------------------- LAMMPS - Large-scale Atomic/Molecular Massively Parallel Simulator http://lammps.sandia.gov, Sandia National Laboratories Steve Plimpton, sjplimp@sandia.gov Copyright (2003) Sandia Corporation. Under the terms of Contract DE-AC04-94AL85000 with Sandia Corporation, the U.S. Government retains certain rights in this software. This software is distributed under the GNU General Public License. See the README file in the top-level LAMMPS directory. ------------------------------------------------------------------------- */ #include #include #include #include "compute_pressure_grem.h" #include "atom.h" #include "update.h" #include "domain.h" #include "modify.h" #include "fix.h" #include "force.h" #include "pair.h" #include "kspace.h" #include "error.h" using namespace LAMMPS_NS; /* ---------------------------------------------------------------------- Last argument is the id of the gREM fix ------------------------------------------------------------------------- */ ComputePressureGrem::ComputePressureGrem(LAMMPS *lmp, int narg, char **arg) : ComputePressure(lmp, narg-1, arg) { int len = strlen(arg[narg-1])+1; fix_grem = new char[len]; strcpy(fix_grem,arg[narg-1]); } /* ---------------------------------------------------------------------- */ ComputePressureGrem::~ComputePressureGrem() { delete [] fix_grem; } /* ---------------------------------------------------------------------- */ void ComputePressureGrem::init() { ComputePressure::init(); // Initialize hook to gREM fix int ifix = modify->find_fix(fix_grem); if (ifix < 0) error->all(FLERR,"Fix grem ID for compute PRESSURE/GREM does not exist"); int dim; scale_grem = (double *)modify->fix[ifix]->extract("scale_grem",dim); if (scale_grem == NULL || dim != 0) error->all(FLERR,"Cannot extract gREM scale factor from fix grem"); } /* ---------------------------------------------------------------------- compute total pressure, averaged over Pxx, Pyy, Pzz ------------------------------------------------------------------------- */ double ComputePressureGrem::compute_scalar() { invoked_scalar = update->ntimestep; if (update->vflag_global != invoked_scalar) error->all(FLERR,"Virial was not tallied on needed timestep"); // invoke temperature if it hasn't been already double t; if (keflag) { if (temperature->invoked_scalar != update->ntimestep) t = temperature->compute_scalar() / (*scale_grem); else t = temperature->scalar / (*scale_grem); } if (dimension == 3) { inv_volume = 1.0 / (domain->xprd * domain->yprd * domain->zprd); virial_compute(3,3); if (keflag) scalar = (temperature->dof * boltz * t + virial[0] + virial[1] + virial[2]) / 3.0 * inv_volume * nktv2p; else scalar = (virial[0] + virial[1] + virial[2]) / 3.0 * inv_volume * nktv2p; } else { inv_volume = 1.0 / (domain->xprd * domain->yprd); virial_compute(2,2); if (keflag) scalar = (temperature->dof * boltz * t + virial[0] + virial[1]) / 2.0 * inv_volume * nktv2p; else scalar = (virial[0] + virial[1]) / 2.0 * inv_volume * nktv2p; } return scalar; } /* ---------------------------------------------------------------------- compute pressure tensor assume KE tensor has already been computed ------------------------------------------------------------------------- */ void ComputePressureGrem::compute_vector() { invoked_vector = update->ntimestep; if (update->vflag_global != invoked_vector) error->all(FLERR,"Virial was not tallied on needed timestep"); if (force->kspace && kspace_virial && force->kspace->scalar_pressure_flag) error->all(FLERR,"Must use 'kspace_modify pressure/scalar no' for " "tensor components with kspace_style msm"); // invoke temperature if it hasn't been already double ke_tensor[6]; if (keflag) { if (temperature->invoked_vector != update->ntimestep) temperature->compute_vector(); for (int i = 0; i < 6; ++i) ke_tensor[i] = temperature->vector[i] / (*scale_grem); } if (dimension == 3) { inv_volume = 1.0 / (domain->xprd * domain->yprd * domain->zprd); virial_compute(6,3); if (keflag) { for (int i = 0; i < 6; i++) vector[i] = (ke_tensor[i] + virial[i]) * inv_volume * nktv2p; } else for (int i = 0; i < 6; i++) vector[i] = virial[i] * inv_volume * nktv2p; } else { inv_volume = 1.0 / (domain->xprd * domain->yprd); virial_compute(4,2); if (keflag) { vector[0] = (ke_tensor[0] + virial[0]) * inv_volume * nktv2p; vector[1] = (ke_tensor[1] + virial[1]) * inv_volume * nktv2p; vector[3] = (ke_tensor[3] + virial[3]) * inv_volume * nktv2p; vector[2] = vector[4] = vector[5] = 0.0; } else { vector[0] = virial[0] * inv_volume * nktv2p; vector[1] = virial[1] * inv_volume * nktv2p; vector[3] = virial[3] * inv_volume * nktv2p; vector[2] = vector[4] = vector[5] = 0.0; } } }