/* -*- c++ -*- ---------------------------------------------------------- LAMMPS - Large-scale Atomic/Molecular Massively Parallel Simulator https://www.lammps.org/, Sandia National Laboratories Steve Plimpton, sjplimp@sandia.gov Copyright (2003) Sandia Corporation. Under the terms of Contract DE-AC04-94AL85000 with Sandia Corporation, the U.S. Government retains certain rights in this software. This software is distributed under the GNU General Public License. See the README file in the top-level LAMMPS directory. ------------------------------------------------------------------------- */ #ifdef COMPUTE_CLASS // clang-format off ComputeStyle(msd,ComputeMSD); // clang-format on #else #ifndef LMP_COMPUTE_MSD_H #define LMP_COMPUTE_MSD_H #include "compute.h" namespace LAMMPS_NS { class ComputeMSD : public Compute { public: ComputeMSD(class LAMMPS *, int, char **); virtual ~ComputeMSD(); void init(); virtual void compute_vector(); void set_arrays(int); protected: int comflag; // comflag = 1 if reference moves with center of mass int avflag; // avflag = 1 if using average position as reference int naverage; // number of samples for average position bigint nmsd; double masstotal; char *id_fix; class FixStore *fix; }; } // namespace LAMMPS_NS #endif #endif /* ERROR/WARNING messages: E: Illegal ... command Self-explanatory. Check the input script syntax and compare to the documentation for the command. You can use -echo screen as a command-line option when running LAMMPS to see the offending line. E: Could not find compute msd fix ID Self-explanatory. */