variable sname index Li-dendritic log ${sname}.min.log units electron newton on boundary p p p atom_style electron read_data data.${sname} #read_restart ${sname}.min.restart pair_style eff/cut 50.112 pair_coeff * * comm_modify vel yes compute effTemp all temp/eff compute effPress all pressure effTemp thermo 10 thermo_style custom step pe temp press thermo_modify temp effTemp press effPress print "Starting minimizer" min_style cg compute 1 all property/atom spin eradius #dump 1 all custom 100 ${sname}.min.lammpstrj id type x y z q c_1[1] c_1[2] #dump 2 all xyz 100 ${sname}.min.xyz min_modify line quadratic dmax 0.05 minimize 0 1.0e-7 1000 2000 write_restart ${sname}.min.restart #undump 1 #undump 2 # NVT reset_timestep 0 timestep 0.005 print "Starting nvt" fix 1 all nvt/eff temp 300.0 300.0 0.1 dump 1 all custom 100 ${sname}.nvt.lammpstrj id type x y z c_1[1] c_1[2] dump 2 all xyz 100 ${sname}.nvt.xyz restart 100 ${sname}.nvt.restart1 ${sname}.nvt.restart2 run 10000 undump 1 undump 2