LAMMPS (1 Feb 2014) # 3d metal shear simulation units metal boundary s s p atom_style atomic lattice fcc 3.52 Lattice spacing in x,y,z = 3.52 3.52 3.52 region box block 0 16.0 0 10.0 0 2.828427 create_box 3 box Created orthogonal box = (0 0 0) to (56.32 35.2 9.95606) 1 by 1 by 1 MPI processor grid lattice fcc 3.52 orient x 1 0 0 orient y 0 1 1 orient z 0 -1 1 origin 0.5 0 0 Lattice spacing in x,y,z = 3.52 4.97803 4.97803 create_atoms 1 box Created 1912 atoms pair_style meam pair_coeff * * library.meam Ni4 Ni.meam Ni4 Ni4 Ni4 neighbor 0.3 bin neigh_modify delay 5 region lower block INF INF INF 0.9 INF INF region upper block INF INF 6.1 INF INF INF group lower region lower 264 atoms in group lower group upper region upper 264 atoms in group upper group boundary union lower upper 528 atoms in group boundary group mobile subtract all boundary 1384 atoms in group mobile set group lower type 2 264 settings made for type set group upper type 3 264 settings made for type # void #region void cylinder z 8 5 2.5 INF INF #delete_atoms region void # temp controllers compute new3d mobile temp compute new2d mobile temp/partial 0 1 1 # equilibrate velocity mobile create 300.0 5812775 temp new3d fix 1 all nve fix 2 boundary setforce 0.0 0.0 0.0 fix 3 mobile temp/rescale 10 300.0 300.0 10.0 1.0 fix_modify 3 temp new3d thermo 25 thermo_modify temp new3d WARNING: Temperature for thermo pressure is not for group all (../thermo.cpp:439) timestep 0.001 run 100 Memory usage per processor = 6.77654 Mbytes Step Temp E_pair E_mol TotEng Press Volume 0 300 -8232.7767 0 -8179.1466 1386.6643 19547.02 25 222.78953 -8188.1215 0 -8148.2941 9095.9008 19547.02 50 300 -8149.7654 0 -8096.1353 10633.141 19684.382 75 304.80657 -8163.4557 0 -8108.9665 7045.457 19759.745 100 300 -8173.6884 0 -8120.0584 5952.521 19886.589 Loop time of 1.5888 on 1 procs for 100 steps with 1912 atoms Pair time (%) = 1.56768 (98.671) Neigh time (%) = 0.0145421 (0.915289) Comm time (%) = 0.0015583 (0.0980806) Outpt time (%) = 6.31809e-05 (0.00397665) Other time (%) = 0.00495219 (0.311694) Nlocal: 1912 ave 1912 max 1912 min Histogram: 1 0 0 0 0 0 0 0 0 0 Nghost: 1672 ave 1672 max 1672 min Histogram: 1 0 0 0 0 0 0 0 0 0 Neighs: 23806 ave 23806 max 23806 min Histogram: 1 0 0 0 0 0 0 0 0 0 FullNghs: 47612 ave 47612 max 47612 min Histogram: 1 0 0 0 0 0 0 0 0 0 Total # of neighbors = 47612 Ave neighs/atom = 24.9017 Neighbor list builds = 5 Dangerous builds = 0 # shear velocity upper set 1.0 0 0 velocity mobile ramp vx 0.0 1.0 y 1.4 8.6 sum yes unfix 3 fix 3 mobile temp/rescale 10 300.0 300.0 10.0 1.0 fix_modify 3 temp new2d #dump 1 all atom 500 dump.meam.shear #dump 2 all image 100 image.*.jpg type type # axes yes 0.8 0.02 view 0 0 zoom 1.5 up 0 1 0 adiam 2.0 #dump_modify 2 pad 4 #dump 3 all movie 100 movie.mpg type type # axes yes 0.8 0.02 view 0 0 zoom 1.5 up 0 1 0 adiam 2.0 #dump_modify 3 pad 4 thermo 100 thermo_modify temp new2d WARNING: Temperature for thermo pressure is not for group all (../thermo.cpp:439) reset_timestep 0 run 3000 Memory usage per processor = 6.95312 Mbytes Step Temp E_pair E_mol TotEng Press Volume 0 300.50853 -8173.6884 0 -8137.8874 4992.9811 19894.297 100 292.0799 -8177.7235 0 -8142.9266 2566.6872 19871.516 200 306.71233 -8177.1504 0 -8140.6103 872.78764 20047.2 300 295.7806 -8172.9505 0 -8137.7127 -1053.769 20091.657 400 309.18439 -8169.6374 0 -8132.8028 -1784.5443 20122.178 500 304.51122 -8163.9147 0 -8127.6369 -160.26993 20183.44 600 300 -8158.55 0 -8122.8096 1555.2344 20279.887 700 304.32794 -8149.4746 0 -8113.2185 3700.5984 20430.504 800 304.79621 -8138.8368 0 -8102.5249 3721.6015 20510.74 900 303.87706 -8128.16 0 -8091.9576 4387.1435 20638.992 1000 300 -8113.4908 0 -8077.7503 6186.7017 20755.029 1100 306.13485 -8097.1731 0 -8060.7018 8904.6623 20879.616 1200 309.15674 -8081.8589 0 -8045.0276 10523.683 20996.875 1300 304.48415 -8064.5597 0 -8028.2851 10063.026 21126.348 1400 300 -8046.7606 0 -8011.0202 10972.46 21238.721 1500 300 -8041.3545 0 -8005.614 11939.553 21374.301 1600 309.60382 -8035.2271 0 -7998.3425 11340.231 21530.1 1700 300 -8029.1688 0 -7993.4284 11298.984 21635.492 1800 300 -8034.2178 0 -7998.4773 9635.8998 21737.07 1900 299.69156 -8037.3123 0 -8001.6086 6094.2811 21857.993 2000 308.23519 -8030.0074 0 -7993.2859 3176.5086 21983.182 2100 300 -8031.5977 0 -7995.8573 1352.4566 22112.054 2200 300 -8039.3918 0 -8003.6514 2078.9229 22231.755 2300 305.77226 -8038.7518 0 -8002.3237 3408.6101 22345.35 2400 300 -8034.7719 0 -7999.0314 5324.2456 22468.716 2500 300 -8034.9187 0 -7999.1782 7770.9385 22588.417 2600 300 -8034.3037 0 -7998.5633 10402.367 22709.34 2700 304.22676 -8032.9652 0 -7996.7213 11603.947 22840.035 2800 306.55646 -8032.2292 0 -7995.7077 10585.627 22959.736 2900 304.12756 -8031.7372 0 -7995.505 7574.3331 23087.988 3000 301.87833 -8033.9958 0 -7998.0316 4111.4578 23197.918 Loop time of 50.7057 on 1 procs for 3000 steps with 1912 atoms Pair time (%) = 49.8856 (98.3827) Neigh time (%) = 0.619792 (1.22233) Comm time (%) = 0.0500011 (0.0986104) Outpt time (%) = 0.00052166 (0.0010288) Other time (%) = 0.14977 (0.295371) Nlocal: 1912 ave 1912 max 1912 min Histogram: 1 0 0 0 0 0 0 0 0 0 Nghost: 1657 ave 1657 max 1657 min Histogram: 1 0 0 0 0 0 0 0 0 0 Neighs: 23337 ave 23337 max 23337 min Histogram: 1 0 0 0 0 0 0 0 0 0 FullNghs: 46674 ave 46674 max 46674 min Histogram: 1 0 0 0 0 0 0 0 0 0 Total # of neighbors = 46674 Ave neighs/atom = 24.4111 Neighbor list builds = 219 Dangerous builds = 0