LAMMPS (7 Jan 2012) using 4 OpenMP thread(s) per MPI task package gpu force 0 0 1 variable x index 1 variable y index 1 variable z index 1 variable xx equal 10*$x variable xx equal 10*1 variable yy equal 10*$y variable yy equal 10*1 variable zz equal 10*$z variable zz equal 10*1 units lj atom_style charge newton off lattice fcc 0.8442 Lattice spacing in x,y,z = 1.6796 1.6796 1.6796 region box block 0 ${xx} 0 ${yy} 0 ${zz} region box block 0 10 0 ${yy} 0 ${zz} region box block 0 10 0 10 0 ${zz} region box block 0 10 0 10 0 10 region half block 0 ${xx} 0 ${yy} 0 4.5 region half block 0 10 0 ${yy} 0 4.5 region half block 0 10 0 10 0 4.5 create_box 2 box Created orthogonal box = (0 0 0) to (16.796 16.796 16.796) 1 by 1 by 3 MPI processor grid create_atoms 1 box Created 4000 atoms group ga region box 4000 atoms in group ga group gp region half 2000 atoms in group gp group gn subtract ga gp 2000 atoms in group gn set group gp charge 0.5 2000 settings made for charge set group gn charge -0.5 2000 settings made for charge set group gn type 2 2000 settings made for type mass 1 1.0 mass 2 1.1 velocity all create 1.44 87287 loop geom pair_style lj/charmm/coul/long/gpu 3 5 pair_coeff 1 1 1.0 1.0 pair_coeff 2 2 0.8 0.85 kspace_style pppm/gpu 1e-4 neighbor 0.3 bin neigh_modify delay 0 every 20 check no fix 1 all nve timestep 0.003 thermo 100 thermo_style custom step temp evdwl ecoul epair etotal press run 400 PPPM initialization ... G vector = 0.58028 grid = 24 24 24 stencil order = 5 RMS precision = 4.53695e-05 using double precision FFTs brick FFT buffer size/proc = 10933 4608 7569 Memory usage per processor = 10.4256 Mbytes Step Temp E_vdwl E_coul E_pair TotEng Press 0 1.44 -4.8899636 0.59246617 2.6419488 4.8014088 -2.1553006 100 1.5653159 -3.997106 0.53227236 2.4535606 4.8009474 4.4827931 200 1.9120682 -3.6115322 0.50248649 1.932934 4.8003192 7.531849 300 2.0762342 -3.6068448 0.4863463 1.6868833 4.8004559 7.7874582 400 2.1645331 -3.5670269 0.45603608 1.554445 4.8004331 7.660223 Loop time of 2.30137 on 12 procs (3 MPI x 4 OpenMP) for 400 steps with 4000 atoms Pair time (%) = 0.315958 (13.7292) Kspce time (%) = 1.21756 (52.9058) Neigh time (%) = 0.599123 (26.0334) Comm time (%) = 0.155391 (6.75213) Outpt time (%) = 0.00126624 (0.0550213) Other time (%) = 0.0120717 (0.524545) FFT time (% of Kspce) = 0.365658 (30.0321) FFT Gflps 3d (1d only) = 2.88358 4.79454 Nlocal: 1333.33 ave 1515 max 1240 min Histogram: 2 0 0 0 0 0 0 0 0 1 Nghost: 8970.67 ave 9172 max 8653 min Histogram: 1 0 0 0 0 0 0 0 1 1 Neighs: 0 ave 0 max 0 min Histogram: 3 0 0 0 0 0 0 0 0 0 FullNghs: 705825 ave 803580 max 641539 min Histogram: 1 1 0 0 0 0 0 0 0 1 Total # of neighbors = 2117474 Ave neighs/atom = 529.369 Neighbor list builds = 20 Dangerous builds = 0