LAMMPS (7 Jan 2012) using 4 OpenMP thread(s) per MPI task variable x index 1 variable y index 1 variable z index 1 variable xx equal 10*$x variable xx equal 10*1 variable yy equal 10*$y variable yy equal 10*1 variable zz equal 10*$z variable zz equal 10*1 units lj atom_style charge newton off lattice fcc 0.8442 Lattice spacing in x,y,z = 1.6796 1.6796 1.6796 region box block 0 ${xx} 0 ${yy} 0 ${zz} region box block 0 10 0 ${yy} 0 ${zz} region box block 0 10 0 10 0 ${zz} region box block 0 10 0 10 0 10 region half block 0 ${xx} 0 ${yy} 0 4.5 region half block 0 10 0 ${yy} 0 4.5 region half block 0 10 0 10 0 4.5 create_box 2 box Created orthogonal box = (0 0 0) to (16.796 16.796 16.796) 1 by 1 by 3 MPI processor grid create_atoms 1 box Created 4000 atoms group ga region box 4000 atoms in group ga group gp region half 2000 atoms in group gp group gn subtract ga gp 2000 atoms in group gn set group gp charge 0.5 2000 settings made for charge set group gn charge -0.5 2000 settings made for charge set group gn type 2 2000 settings made for type mass 1 1.0 mass 2 1.1 velocity all create 1.44 87287 loop geom pair_style lj/charmm/coul/long 3 5 pair_coeff 1 1 1.0 1.0 pair_coeff 2 2 0.8 0.85 kspace_style pppm 1e-4 kspace_modify order 6 neighbor 0.3 bin neigh_modify delay 0 every 20 check no fix 1 all nve timestep 0.003 thermo 100 thermo_style custom step temp evdwl ecoul epair etotal press run 400 PPPM initialization ... G vector = 0.574029 grid = 20 20 20 stencil order = 6 RMS precision = 5.4339e-05 using double precision FFTs brick FFT buffer size/proc = 9477 2800 8748 Memory usage per processor = 8.44113 Mbytes Step Temp E_vdwl E_coul E_pair TotEng Press 0 1.44 -4.8899632 0.60831913 2.6419498 4.8014098 -2.1553363 100 1.565306 -3.9971105 0.54597283 2.453555 4.8009271 4.4827347 200 1.9120525 -3.6115332 0.51490063 1.9329389 4.8003006 7.5317661 300 2.0762324 -3.6068595 0.49834359 1.686866 4.800436 7.7873526 400 2.1644244 -3.5668411 0.46744049 1.5545885 4.8004134 7.6610292 Loop time of 10.9573 on 12 procs (3 MPI x 4 OpenMP) for 400 steps with 4000 atoms Pair time (%) = 8.73418 (79.7108) Kspce time (%) = 1.57003 (14.3285) Neigh time (%) = 0.55128 (5.03115) Comm time (%) = 0.0886877 (0.809391) Outpt time (%) = 0.000128428 (0.00117207) Other time (%) = 0.0130354 (0.118965) FFT time (% of Kspce) = 0.153275 (9.76255) FFT Gflps 3d (1d only) = 3.75262 8.64152 Nlocal: 1333.33 ave 1515 max 1239 min Histogram: 2 0 0 0 0 0 0 0 0 1 Nghost: 8971 ave 9172 max 8654 min Histogram: 1 0 0 0 0 0 0 0 1 1 Neighs: 528413 ave 572183 max 489320 min Histogram: 1 0 0 0 1 0 0 0 0 1 Total # of neighbors = 1585239 Ave neighs/atom = 396.31 Neighbor list builds = 20 Dangerous builds = 0