/* ---------------------------------------------------------------------- LAMMPS - Large-scale Atomic/Molecular Massively Parallel Simulator http://lammps.sandia.gov, Sandia National Laboratories Steve Plimpton, sjplimp@sandia.gov Copyright (2003) Sandia Corporation. Under the terms of Contract DE-AC04-94AL85000 with Sandia Corporation, the U.S. Government retains certain rights in this software. This software is distributed under the GNU General Public License. See the README file in the top-level LAMMPS directory. ------------------------------------------------------------------------- */ #include #include #include "fix_wall_reflect.h" #include "atom.h" #include "comm.h" #include "update.h" #include "modify.h" #include "domain.h" #include "lattice.h" #include "input.h" #include "variable.h" #include "error.h" #include "force.h" using namespace LAMMPS_NS; using namespace FixConst; enum{XLO=0,XHI=1,YLO=2,YHI=3,ZLO=4,ZHI=5}; enum{NONE=0,EDGE,CONSTANT,VARIABLE}; /* ---------------------------------------------------------------------- */ FixWallReflect::FixWallReflect(LAMMPS *lmp, int narg, char **arg) : Fix(lmp, narg, arg) { if (narg < 4) error->all(FLERR,"Illegal fix wall/reflect command"); // parse args nwall = 0; int scaleflag = 1; int iarg = 3; while (iarg < narg) { if ((strcmp(arg[iarg],"xlo") == 0) || (strcmp(arg[iarg],"xhi") == 0) || (strcmp(arg[iarg],"ylo") == 0) || (strcmp(arg[iarg],"yhi") == 0) || (strcmp(arg[iarg],"zlo") == 0) || (strcmp(arg[iarg],"zhi") == 0)) { if (iarg+2 > narg) error->all(FLERR,"Illegal fix wall/reflect command"); int newwall; if (strcmp(arg[iarg],"xlo") == 0) newwall = XLO; else if (strcmp(arg[iarg],"xhi") == 0) newwall = XHI; else if (strcmp(arg[iarg],"ylo") == 0) newwall = YLO; else if (strcmp(arg[iarg],"yhi") == 0) newwall = YHI; else if (strcmp(arg[iarg],"zlo") == 0) newwall = ZLO; else if (strcmp(arg[iarg],"zhi") == 0) newwall = ZHI; for (int m = 0; (m < nwall) && (m < 6); m++) if (newwall == wallwhich[m]) error->all(FLERR,"Wall defined twice in fix wall/reflect command"); wallwhich[nwall] = newwall; if (strcmp(arg[iarg+1],"EDGE") == 0) { wallstyle[nwall] = EDGE; int dim = wallwhich[nwall] / 2; int side = wallwhich[nwall] % 2; if (side == 0) coord0[nwall] = domain->boxlo[dim]; else coord0[nwall] = domain->boxhi[dim]; } else if (strstr(arg[iarg+1],"v_") == arg[iarg+1]) { wallstyle[nwall] = VARIABLE; int n = strlen(&arg[iarg+1][2]) + 1; varstr[nwall] = new char[n]; strcpy(varstr[nwall],&arg[iarg+1][2]); } else { wallstyle[nwall] = CONSTANT; coord0[nwall] = force->numeric(FLERR,arg[iarg+1]); } nwall++; iarg += 2; } else if (strcmp(arg[iarg],"units") == 0) { if (iarg+2 > narg) error->all(FLERR,"Illegal wall/reflect command"); if (strcmp(arg[iarg+1],"box") == 0) scaleflag = 0; else if (strcmp(arg[iarg+1],"lattice") == 0) scaleflag = 1; else error->all(FLERR,"Illegal fix wall/reflect command"); iarg += 2; } else error->all(FLERR,"Illegal fix wall/reflect command"); } // error check if (nwall == 0) error->all(FLERR,"Illegal fix wall command"); for (int m = 0; m < nwall; m++) { if ((wallwhich[m] == XLO || wallwhich[m] == XHI) && domain->xperiodic) error->all(FLERR,"Cannot use fix wall/reflect in periodic dimension"); if ((wallwhich[m] == YLO || wallwhich[m] == YHI) && domain->yperiodic) error->all(FLERR,"Cannot use fix wall/reflect in periodic dimension"); if ((wallwhich[m] == ZLO || wallwhich[m] == ZHI) && domain->zperiodic) error->all(FLERR,"Cannot use fix wall/reflect in periodic dimension"); } for (int m = 0; m < nwall; m++) if ((wallwhich[m] == ZLO || wallwhich[m] == ZHI) && domain->dimension == 2) error->all(FLERR, "Cannot use fix wall/reflect zlo/zhi for a 2d simulation"); // scale factors for CONSTANT and VARIABLE walls int flag = 0; for (int m = 0; m < nwall; m++) if (wallstyle[m] != EDGE) flag = 1; if (flag) { if (scaleflag) { xscale = domain->lattice->xlattice; yscale = domain->lattice->ylattice; zscale = domain->lattice->zlattice; } else xscale = yscale = zscale = 1.0; for (int m = 0; m < nwall; m++) { if (wallstyle[m] != CONSTANT) continue; if (wallwhich[m] < YLO) coord0[m] *= xscale; else if (wallwhich[m] < ZLO) coord0[m] *= yscale; else coord0[m] *= zscale; } } // set varflag if any wall positions are variable varflag = 0; for (int m = 0; m < nwall; m++) if (wallstyle[m] == VARIABLE) varflag = 1; } /* ---------------------------------------------------------------------- */ FixWallReflect::~FixWallReflect() { if (copymode) return; for (int m = 0; m < nwall; m++) if (wallstyle[m] == VARIABLE) delete [] varstr[m]; } /* ---------------------------------------------------------------------- */ int FixWallReflect::setmask() { int mask = 0; mask |= POST_INTEGRATE; mask |= POST_INTEGRATE_RESPA; return mask; } /* ---------------------------------------------------------------------- */ void FixWallReflect::init() { for (int m = 0; m < nwall; m++) { if (wallstyle[m] != VARIABLE) continue; varindex[m] = input->variable->find(varstr[m]); if (varindex[m] < 0) error->all(FLERR,"Variable name for fix wall/reflect does not exist"); if (!input->variable->equalstyle(varindex[m])) error->all(FLERR,"Variable for fix wall/reflect is invalid style"); } int nrigid = 0; for (int i = 0; i < modify->nfix; i++) if (modify->fix[i]->rigid_flag) nrigid++; if (nrigid && comm->me == 0) error->warning(FLERR,"Should not allow rigid bodies to bounce off " "relecting walls"); } /* ---------------------------------------------------------------------- */ void FixWallReflect::post_integrate() { int i,dim,side; double coord; // coord = current position of wall // evaluate variable if necessary, wrap with clear/add double **x = atom->x; double **v = atom->v; int *mask = atom->mask; int nlocal = atom->nlocal; if (varflag) modify->clearstep_compute(); for (int m = 0; m < nwall; m++) { if (wallstyle[m] == VARIABLE) { coord = input->variable->compute_equal(varindex[m]); if (wallwhich[m] < YLO) coord *= xscale; else if (wallwhich[m] < ZLO) coord *= yscale; else coord *= zscale; } else coord = coord0[m]; dim = wallwhich[m] / 2; side = wallwhich[m] % 2; for (i = 0; i < nlocal; i++) if (mask[i] & groupbit) { if (side == 0) { if (x[i][dim] < coord) { x[i][dim] = coord + (coord - x[i][dim]); v[i][dim] = -v[i][dim]; } } else { if (x[i][dim] > coord) { x[i][dim] = coord - (x[i][dim] - coord); v[i][dim] = -v[i][dim]; } } } } if (varflag) modify->addstep_compute(update->ntimestep + 1); }