from __future__ import print_function class LAMMPSPairPotential(object): def __init__(self): self.pmap=dict() self.units='lj' def map_coeff(self,name,ltype): self.pmap[ltype]=name def check_units(self,units): if (units != self.units): raise Exception("Conflicting units: %s vs. %s" % (self.units,units)) class LJCutMelt(LAMMPSPairPotential): def __init__(self): super(LJCutMelt,self).__init__() # set coeffs: 48*eps*sig**12, 24*eps*sig**6, # 4*eps*sig**12, 4*eps*sig**6 self.units = 'lj' self.coeff = {'lj' : {'lj' : (48.0,24.0,4.0,4.0)}} def compute_force(self,rsq,itype,jtype): coeff = self.coeff[self.pmap[itype]][self.pmap[jtype]] r2inv = 1.0/rsq r6inv = r2inv*r2inv*r2inv lj1 = coeff[0] lj2 = coeff[1] return (r6inv * (lj1*r6inv - lj2))*r2inv def compute_energy(self,rsq,itype,jtype): coeff = self.coeff[self.pmap[itype]][self.pmap[jtype]] r2inv = 1.0/rsq r6inv = r2inv*r2inv*r2inv lj3 = coeff[2] lj4 = coeff[3] return (r6inv * (lj3*r6inv - lj4)) class LJCutSPCE(LAMMPSPairPotential): def __init__(self): super(LJCutSPCE,self).__init__() self.units='real' # SPCE oxygen LJ parameters in real units eps=0.15535 sig=3.166 self.coeff = {'OW' : {'OW' : (48.0*eps*sig**12,24.0*eps*sig**6, 4.0*eps*sig**12, 4.0*eps*sig**6), 'HW' : (0.0,0.0, 0.0,0.0)}, 'HW' : {'OW' : (0.0,0.0, 0.0,0.0), 'HW' : (0.0,0.0, 0.0,0.0)}} def compute_force(self,rsq,itype,jtype): coeff = self.coeff[self.pmap[itype]][self.pmap[jtype]] r2inv = 1.0/rsq r6inv = r2inv*r2inv*r2inv lj1 = coeff[0] lj2 = coeff[1] return (r6inv * (lj1*r6inv - lj2))*r2inv def compute_energy(self,rsq,itype,jtype): coeff = self.coeff[self.pmap[itype]][self.pmap[jtype]] r2inv = 1.0/rsq r6inv = r2inv*r2inv*r2inv lj3 = coeff[2] lj4 = coeff[3] return (r6inv * (lj3*r6inv - lj4))