/* ---------------------------------------------------------------------- LAMMPS - Large-scale Atomic/Molecular Massively Parallel Simulator http://lammps.sandia.gov, Sandia National Laboratories Steve Plimpton, sjplimp@sandia.gov Copyright (2003) Sandia Corporation. Under the terms of Contract DE-AC04-94AL85000 with Sandia Corporation, the U.S. Government retains certain rights in this software. This software is distributed under the GNU General Public License. See the README file in the top-level LAMMPS directory. ------------------------------------------------------------------------- */ #include #include #include #include "comm.h" #include "universe.h" #include "atom.h" #include "atom_vec.h" #include "force.h" #include "pair.h" #include "modify.h" #include "fix.h" #include "compute.h" #include "domain.h" #include "output.h" #include "dump.h" #include "group.h" #include "procmap.h" #include "accelerator_kokkos.h" #include "memory.h" #include "error.h" #ifdef _OPENMP #include #endif using namespace LAMMPS_NS; #define BUFMIN 1000 // also in comm styles enum{SINGLE,MULTI}; // same as in Comm sub-styles enum{MULTIPLE}; // same as in ProcMap enum{ONELEVEL,TWOLEVEL,NUMA,CUSTOM}; enum{CART,CARTREORDER,XYZ}; enum{LAYOUT_UNIFORM,LAYOUT_NONUNIFORM,LAYOUT_TILED}; // several files /* ---------------------------------------------------------------------- */ Comm::Comm(LAMMPS *lmp) : Pointers(lmp) { MPI_Comm_rank(world,&me); MPI_Comm_size(world,&nprocs); mode = 0; bordergroup = 0; cutghostuser = 0.0; cutusermulti = NULL; ghost_velocity = 0; user_procgrid[0] = user_procgrid[1] = user_procgrid[2] = 0; coregrid[0] = coregrid[1] = coregrid[2] = 1; gridflag = ONELEVEL; mapflag = CART; customfile = NULL; outfile = NULL; recv_from_partition = send_to_partition = -1; otherflag = 0; maxexchange_atom = maxexchange_fix = 0; grid2proc = NULL; xsplit = ysplit = zsplit = NULL; rcbnew = 0; // use of OpenMP threads // query OpenMP for number of threads/process set by user at run-time // if the OMP_NUM_THREADS environment variable is not set, we default // to using 1 thread. This follows the principle of the least surprise, // while practically all OpenMP implementations violate it by using // as many threads as there are (virtual) CPU cores by default. nthreads = 1; #ifdef _OPENMP if (lmp->kokkos) { nthreads = lmp->kokkos->num_threads * lmp->kokkos->numa; } else if (getenv("OMP_NUM_THREADS") == NULL) { nthreads = 1; if (me == 0) error->message(FLERR,"OMP_NUM_THREADS environment is not set. " "Defaulting to 1 thread."); } else { nthreads = omp_get_max_threads(); } // enforce consistent number of threads across all MPI tasks MPI_Bcast(&nthreads,1,MPI_INT,0,world); if (!lmp->kokkos) omp_set_num_threads(nthreads); if (me == 0) { if (screen) fprintf(screen," using %d OpenMP thread(s) per MPI task\n",nthreads); if (logfile) fprintf(logfile," using %d OpenMP thread(s) per MPI task\n",nthreads); } #endif } /* ---------------------------------------------------------------------- */ Comm::~Comm() { memory->destroy(grid2proc); memory->destroy(xsplit); memory->destroy(ysplit); memory->destroy(zsplit); memory->destroy(cutusermulti); delete [] customfile; delete [] outfile; } /* ---------------------------------------------------------------------- deep copy of arrays from old Comm class to new one all public/protected vectors/arrays in parent Comm class must be copied called from alternate constructor of child classes when new comm style is created from Input ------------------------------------------------------------------------- */ void Comm::copy_arrays(Comm *oldcomm) { if (oldcomm->grid2proc) { memory->create(grid2proc,procgrid[0],procgrid[1],procgrid[2], "comm:grid2proc"); memcpy(&grid2proc[0][0][0],&oldcomm->grid2proc[0][0][0], (procgrid[0]*procgrid[1]*procgrid[2])*sizeof(int)); memory->create(xsplit,procgrid[0]+1,"comm:xsplit"); memory->create(ysplit,procgrid[1]+1,"comm:ysplit"); memory->create(zsplit,procgrid[2]+1,"comm:zsplit"); memcpy(xsplit,oldcomm->xsplit,(procgrid[0]+1)*sizeof(double)); memcpy(ysplit,oldcomm->ysplit,(procgrid[1]+1)*sizeof(double)); memcpy(zsplit,oldcomm->zsplit,(procgrid[2]+1)*sizeof(double)); } if (oldcomm->cutusermulti) { memory->create(cutusermulti,atom->ntypes+1,"comm:cutusermulti"); memcpy(cutusermulti,oldcomm->cutusermulti,atom->ntypes+1); } if (customfile) { int n = strlen(oldcomm->customfile) + 1; customfile = new char[n]; strcpy(customfile,oldcomm->customfile); } if (outfile) { int n = strlen(oldcomm->outfile) + 1; outfile = new char[n]; strcpy(outfile,oldcomm->outfile); } } /* ---------------------------------------------------------------------- common to all Comm styles ------------------------------------------------------------------------- */ void Comm::init() { triclinic = domain->triclinic; map_style = atom->map_style; // check warn if any proc's subbox is smaller than neigh skin // since may lead to lost atoms in exchange() // really should check every exchange() in case box size is shrinking // but seems overkill to do that (fix balance does perform this check) domain->subbox_too_small_check(neighbor->skin); // comm_only = 1 if only x,f are exchanged in forward/reverse comm // comm_x_only = 0 if ghost_velocity since velocities are added comm_x_only = atom->avec->comm_x_only; comm_f_only = atom->avec->comm_f_only; if (ghost_velocity) comm_x_only = 0; // set per-atom sizes for forward/reverse/border comm // augment by velocity and fix quantities if needed size_forward = atom->avec->size_forward; size_reverse = atom->avec->size_reverse; size_border = atom->avec->size_border; if (ghost_velocity) size_forward += atom->avec->size_velocity; if (ghost_velocity) size_border += atom->avec->size_velocity; for (int i = 0; i < modify->nfix; i++) size_border += modify->fix[i]->comm_border; // per-atom limits for communication // maxexchange = max # of datums in exchange comm, set in exchange() // maxforward = # of datums in largest forward comm // maxreverse = # of datums in largest reverse comm // query pair,fix,compute,dump for their requirements // pair style can force reverse comm even if newton off maxforward = MAX(size_forward,size_border); maxreverse = size_reverse; if (force->pair) maxforward = MAX(maxforward,force->pair->comm_forward); if (force->pair) maxreverse = MAX(maxreverse,force->pair->comm_reverse); for (int i = 0; i < modify->nfix; i++) { maxforward = MAX(maxforward,modify->fix[i]->comm_forward); maxreverse = MAX(maxreverse,modify->fix[i]->comm_reverse); } for (int i = 0; i < modify->ncompute; i++) { maxforward = MAX(maxforward,modify->compute[i]->comm_forward); maxreverse = MAX(maxreverse,modify->compute[i]->comm_reverse); } for (int i = 0; i < output->ndump; i++) { maxforward = MAX(maxforward,output->dump[i]->comm_forward); maxreverse = MAX(maxreverse,output->dump[i]->comm_reverse); } if (force->newton == 0) maxreverse = 0; if (force->pair) maxreverse = MAX(maxreverse,force->pair->comm_reverse_off); } /* ---------------------------------------------------------------------- modify communication params invoked from input script by comm_modify command ------------------------------------------------------------------------- */ void Comm::modify_params(int narg, char **arg) { if (narg < 1) error->all(FLERR,"Illegal comm_modify command"); int iarg = 0; while (iarg < narg) { if (strcmp(arg[iarg],"mode") == 0) { if (iarg+2 > narg) error->all(FLERR,"Illegal comm_modify command"); if (strcmp(arg[iarg+1],"single") == 0) { // need to reset cutghostuser when switching comm mode if (mode == MULTI) cutghostuser = 0.0; memory->destroy(cutusermulti); cutusermulti = NULL; mode = SINGLE; } else if (strcmp(arg[iarg+1],"multi") == 0) { // need to reset cutghostuser when switching comm mode if (mode == SINGLE) cutghostuser = 0.0; mode = MULTI; } else error->all(FLERR,"Illegal comm_modify command"); iarg += 2; } else if (strcmp(arg[iarg],"group") == 0) { if (iarg+2 > narg) error->all(FLERR,"Illegal comm_modify command"); bordergroup = group->find(arg[iarg+1]); if (bordergroup < 0) error->all(FLERR,"Invalid group in comm_modify command"); if (bordergroup && (atom->firstgroupname == NULL || strcmp(arg[iarg+1],atom->firstgroupname) != 0)) error->all(FLERR,"Comm_modify group != atom_modify first group"); iarg += 2; } else if (strcmp(arg[iarg],"cutoff") == 0) { if (iarg+2 > narg) error->all(FLERR,"Illegal comm_modify command"); if (mode == MULTI) error->all(FLERR, "Use cutoff/multi keyword to set cutoff in multi mode"); cutghostuser = force->numeric(FLERR,arg[iarg+1]); if (cutghostuser < 0.0) error->all(FLERR,"Invalid cutoff in comm_modify command"); iarg += 2; } else if (strcmp(arg[iarg],"cutoff/multi") == 0) { int i,nlo,nhi; double cut; if (mode == SINGLE) error->all(FLERR,"Use cutoff keyword to set cutoff in single mode"); if (domain->box_exist == 0) error->all(FLERR, "Cannot set cutoff/multi before simulation box is defined"); const int ntypes = atom->ntypes; if (iarg+3 > narg) error->all(FLERR,"Illegal comm_modify command"); if (cutusermulti == NULL) { memory->create(cutusermulti,ntypes+1,"comm:cutusermulti"); for (i=0; i < ntypes+1; ++i) cutusermulti[i] = -1.0; } force->bounds(FLERR,arg[iarg+1],ntypes,nlo,nhi,1); cut = force->numeric(FLERR,arg[iarg+2]); cutghostuser = MAX(cutghostuser,cut); if (cut < 0.0) error->all(FLERR,"Invalid cutoff in comm_modify command"); for (i=nlo; i<=nhi; ++i) cutusermulti[i] = cut; iarg += 3; } else if (strcmp(arg[iarg],"vel") == 0) { if (iarg+2 > narg) error->all(FLERR,"Illegal comm_modify command"); if (strcmp(arg[iarg+1],"yes") == 0) ghost_velocity = 1; else if (strcmp(arg[iarg+1],"no") == 0) ghost_velocity = 0; else error->all(FLERR,"Illegal comm_modify command"); iarg += 2; } else error->all(FLERR,"Illegal comm_modify command"); } } /* ---------------------------------------------------------------------- set dimensions for 3d grid of processors, and associated flags invoked from input script by processors command ------------------------------------------------------------------------- */ void Comm::set_processors(int narg, char **arg) { if (narg < 3) error->all(FLERR,"Illegal processors command"); if (strcmp(arg[0],"*") == 0) user_procgrid[0] = 0; else user_procgrid[0] = force->inumeric(FLERR,arg[0]); if (strcmp(arg[1],"*") == 0) user_procgrid[1] = 0; else user_procgrid[1] = force->inumeric(FLERR,arg[1]); if (strcmp(arg[2],"*") == 0) user_procgrid[2] = 0; else user_procgrid[2] = force->inumeric(FLERR,arg[2]); if (user_procgrid[0] < 0 || user_procgrid[1] < 0 || user_procgrid[2] < 0) error->all(FLERR,"Illegal processors command"); int p = user_procgrid[0]*user_procgrid[1]*user_procgrid[2]; if (p && p != nprocs) error->all(FLERR,"Specified processors != physical processors"); int iarg = 3; while (iarg < narg) { if (strcmp(arg[iarg],"grid") == 0) { if (iarg+2 > narg) error->all(FLERR,"Illegal processors command"); if (strcmp(arg[iarg+1],"onelevel") == 0) { gridflag = ONELEVEL; } else if (strcmp(arg[iarg+1],"twolevel") == 0) { if (iarg+6 > narg) error->all(FLERR,"Illegal processors command"); gridflag = TWOLEVEL; ncores = force->inumeric(FLERR,arg[iarg+2]); if (strcmp(arg[iarg+3],"*") == 0) user_coregrid[0] = 0; else user_coregrid[0] = force->inumeric(FLERR,arg[iarg+3]); if (strcmp(arg[iarg+4],"*") == 0) user_coregrid[1] = 0; else user_coregrid[1] = force->inumeric(FLERR,arg[iarg+4]); if (strcmp(arg[iarg+5],"*") == 0) user_coregrid[2] = 0; else user_coregrid[2] = force->inumeric(FLERR,arg[iarg+5]); if (ncores <= 0 || user_coregrid[0] < 0 || user_coregrid[1] < 0 || user_coregrid[2] < 0) error->all(FLERR,"Illegal processors command"); iarg += 4; } else if (strcmp(arg[iarg+1],"numa") == 0) { gridflag = NUMA; } else if (strcmp(arg[iarg+1],"custom") == 0) { if (iarg+3 > narg) error->all(FLERR,"Illegal processors command"); gridflag = CUSTOM; delete [] customfile; int n = strlen(arg[iarg+2]) + 1; customfile = new char[n]; strcpy(customfile,arg[iarg+2]); iarg += 1; } else error->all(FLERR,"Illegal processors command"); iarg += 2; } else if (strcmp(arg[iarg],"map") == 0) { if (iarg+2 > narg) error->all(FLERR,"Illegal processors command"); if (strcmp(arg[iarg+1],"cart") == 0) mapflag = CART; else if (strcmp(arg[iarg+1],"cart/reorder") == 0) mapflag = CARTREORDER; else if (strcmp(arg[iarg+1],"xyz") == 0 || strcmp(arg[iarg+1],"xzy") == 0 || strcmp(arg[iarg+1],"yxz") == 0 || strcmp(arg[iarg+1],"yzx") == 0 || strcmp(arg[iarg+1],"zxy") == 0 || strcmp(arg[iarg+1],"zyx") == 0) { mapflag = XYZ; strncpy(xyz,arg[iarg+1],3); } else error->all(FLERR,"Illegal processors command"); iarg += 2; } else if (strcmp(arg[iarg],"part") == 0) { if (iarg+4 > narg) error->all(FLERR,"Illegal processors command"); if (universe->nworlds == 1) error->all(FLERR, "Cannot use processors part command " "without using partitions"); int isend = force->inumeric(FLERR,arg[iarg+1]); int irecv = force->inumeric(FLERR,arg[iarg+2]); if (isend < 1 || isend > universe->nworlds || irecv < 1 || irecv > universe->nworlds || isend == irecv) error->all(FLERR,"Invalid partitions in processors part command"); if (isend-1 == universe->iworld) { if (send_to_partition >= 0) error->all(FLERR, "Sending partition in processors part command " "is already a sender"); send_to_partition = irecv-1; } if (irecv-1 == universe->iworld) { if (recv_from_partition >= 0) error->all(FLERR, "Receiving partition in processors part command " "is already a receiver"); recv_from_partition = isend-1; } // only receiver has otherflag dependency if (strcmp(arg[iarg+3],"multiple") == 0) { if (universe->iworld == irecv-1) { otherflag = 1; other_style = MULTIPLE; } } else error->all(FLERR,"Illegal processors command"); iarg += 4; } else if (strcmp(arg[iarg],"file") == 0) { if (iarg+2 > narg) error->all(FLERR,"Illegal processors command"); delete [] outfile; int n = strlen(arg[iarg+1]) + 1; outfile = new char[n]; strcpy(outfile,arg[iarg+1]); iarg += 2; } else error->all(FLERR,"Illegal processors command"); } // error checks if (gridflag == NUMA && mapflag != CART) error->all(FLERR,"Processors grid numa and map style are incompatible"); if (otherflag && (gridflag == NUMA || gridflag == CUSTOM)) error->all(FLERR, "Processors part option and grid style are incompatible"); } /* ---------------------------------------------------------------------- create a 3d grid of procs based on Nprocs and box size & shape map processors to grid, setup xyz split for a uniform grid ------------------------------------------------------------------------- */ void Comm::set_proc_grid(int outflag) { // recv 3d proc grid of another partition if my 3d grid depends on it if (recv_from_partition >= 0) { if (me == 0) { MPI_Recv(other_procgrid,3,MPI_INT, universe->root_proc[recv_from_partition],0, universe->uworld,MPI_STATUS_IGNORE); MPI_Recv(other_coregrid,3,MPI_INT, universe->root_proc[recv_from_partition],0, universe->uworld,MPI_STATUS_IGNORE); } MPI_Bcast(other_procgrid,3,MPI_INT,0,world); MPI_Bcast(other_coregrid,3,MPI_INT,0,world); } // create ProcMap class to create 3d grid and map procs to it ProcMap *pmap = new ProcMap(lmp); // create 3d grid of processors // produces procgrid and coregrid (if relevant) if (gridflag == ONELEVEL) { pmap->onelevel_grid(nprocs,user_procgrid,procgrid, otherflag,other_style,other_procgrid,other_coregrid); } else if (gridflag == TWOLEVEL) { pmap->twolevel_grid(nprocs,user_procgrid,procgrid, ncores,user_coregrid,coregrid, otherflag,other_style,other_procgrid,other_coregrid); } else if (gridflag == NUMA) { pmap->numa_grid(nprocs,user_procgrid,procgrid,coregrid); } else if (gridflag == CUSTOM) { pmap->custom_grid(customfile,nprocs,user_procgrid,procgrid); } // error check on procgrid // should not be necessary due to ProcMap if (procgrid[0]*procgrid[1]*procgrid[2] != nprocs) error->all(FLERR,"Bad grid of processors"); if (domain->dimension == 2 && procgrid[2] != 1) error->all(FLERR,"Processor count in z must be 1 for 2d simulation"); // grid2proc[i][j][k] = proc that owns i,j,k location in 3d grid if (grid2proc) memory->destroy(grid2proc); memory->create(grid2proc,procgrid[0],procgrid[1],procgrid[2], "comm:grid2proc"); // map processor IDs to 3d processor grid // produces myloc, procneigh, grid2proc if (gridflag == ONELEVEL) { if (mapflag == CART) pmap->cart_map(0,procgrid,myloc,procneigh,grid2proc); else if (mapflag == CARTREORDER) pmap->cart_map(1,procgrid,myloc,procneigh,grid2proc); else if (mapflag == XYZ) pmap->xyz_map(xyz,procgrid,myloc,procneigh,grid2proc); } else if (gridflag == TWOLEVEL) { if (mapflag == CART) pmap->cart_map(0,procgrid,ncores,coregrid,myloc,procneigh,grid2proc); else if (mapflag == CARTREORDER) pmap->cart_map(1,procgrid,ncores,coregrid,myloc,procneigh,grid2proc); else if (mapflag == XYZ) pmap->xyz_map(xyz,procgrid,ncores,coregrid,myloc,procneigh,grid2proc); } else if (gridflag == NUMA) { pmap->numa_map(0,coregrid,myloc,procneigh,grid2proc); } else if (gridflag == CUSTOM) { pmap->custom_map(procgrid,myloc,procneigh,grid2proc); } // print 3d grid info to screen and logfile if (outflag && me == 0) { if (screen) { fprintf(screen," %d by %d by %d MPI processor grid\n", procgrid[0],procgrid[1],procgrid[2]); if (gridflag == NUMA || gridflag == TWOLEVEL) fprintf(screen," %d by %d by %d core grid within node\n", coregrid[0],coregrid[1],coregrid[2]); } if (logfile) { fprintf(logfile," %d by %d by %d MPI processor grid\n", procgrid[0],procgrid[1],procgrid[2]); if (gridflag == NUMA || gridflag == TWOLEVEL) fprintf(logfile," %d by %d by %d core grid within node\n", coregrid[0],coregrid[1],coregrid[2]); } } // print 3d grid details to outfile if (outfile) pmap->output(outfile,procgrid,grid2proc); // free ProcMap class delete pmap; // set xsplit,ysplit,zsplit for uniform spacings memory->destroy(xsplit); memory->destroy(ysplit); memory->destroy(zsplit); memory->create(xsplit,procgrid[0]+1,"comm:xsplit"); memory->create(ysplit,procgrid[1]+1,"comm:ysplit"); memory->create(zsplit,procgrid[2]+1,"comm:zsplit"); for (int i = 0; i < procgrid[0]; i++) xsplit[i] = i * 1.0/procgrid[0]; for (int i = 0; i < procgrid[1]; i++) ysplit[i] = i * 1.0/procgrid[1]; for (int i = 0; i < procgrid[2]; i++) zsplit[i] = i * 1.0/procgrid[2]; xsplit[procgrid[0]] = ysplit[procgrid[1]] = zsplit[procgrid[2]] = 1.0; // set lamda box params after procs are assigned // only set once unless load-balancing occurs if (domain->triclinic) domain->set_lamda_box(); // send my 3d proc grid to another partition if requested if (send_to_partition >= 0) { if (me == 0) { MPI_Send(procgrid,3,MPI_INT, universe->root_proc[send_to_partition],0, universe->uworld); MPI_Send(coregrid,3,MPI_INT, universe->root_proc[send_to_partition],0, universe->uworld); } } } /* ---------------------------------------------------------------------- determine which proc owns atom with coord x[3] based on current decomp x will be in box (orthogonal) or lamda coords (triclinic) if layout = UNIFORM, calculate owning proc directly if layout = NONUNIFORM, iteratively find owning proc via binary search if layout = TILED, CommTiled has its own method return owning proc ID via grid2proc return igx,igy,igz = logical grid loc of owing proc within 3d grid of procs ------------------------------------------------------------------------- */ int Comm::coord2proc(double *x, int &igx, int &igy, int &igz) { double *prd = domain->prd; double *boxlo = domain->boxlo; // initialize triclinic b/c coord2proc can be called before Comm::init() // via Irregular::migrate_atoms() triclinic = domain->triclinic; if (layout == LAYOUT_UNIFORM) { if (triclinic == 0) { igx = static_cast (procgrid[0] * (x[0]-boxlo[0]) / prd[0]); igy = static_cast (procgrid[1] * (x[1]-boxlo[1]) / prd[1]); igz = static_cast (procgrid[2] * (x[2]-boxlo[2]) / prd[2]); } else { igx = static_cast (procgrid[0] * x[0]); igy = static_cast (procgrid[1] * x[1]); igz = static_cast (procgrid[2] * x[2]); } } else if (layout == LAYOUT_NONUNIFORM) { if (triclinic == 0) { igx = binary((x[0]-boxlo[0])/prd[0],procgrid[0],xsplit); igy = binary((x[1]-boxlo[1])/prd[1],procgrid[1],ysplit); igz = binary((x[2]-boxlo[2])/prd[2],procgrid[2],zsplit); } else { igx = binary(x[0],procgrid[0],xsplit); igy = binary(x[1],procgrid[1],ysplit); igz = binary(x[2],procgrid[2],zsplit); } } if (igx < 0) igx = 0; if (igx >= procgrid[0]) igx = procgrid[0] - 1; if (igy < 0) igy = 0; if (igy >= procgrid[1]) igy = procgrid[1] - 1; if (igz < 0) igz = 0; if (igz >= procgrid[2]) igz = procgrid[2] - 1; return grid2proc[igx][igy][igz]; } /* ---------------------------------------------------------------------- binary search for value in N-length ascending vec value may be outside range of vec limits always return index from 0 to N-1 inclusive return 0 if value < vec[0] reutrn N-1 if value >= vec[N-1] return index = 1 to N-2 if vec[index] <= value < vec[index+1] ------------------------------------------------------------------------- */ int Comm::binary(double value, int n, double *vec) { int lo = 0; int hi = n-1; if (value < vec[lo]) return lo; if (value >= vec[hi]) return hi; // insure vec[lo] <= value < vec[hi] at every iteration // done when lo,hi are adjacent int index = (lo+hi)/2; while (lo < hi-1) { if (value < vec[index]) hi = index; else if (value >= vec[index]) lo = index; index = (lo+hi)/2; } return index; } /* ---------------------------------------------------------------------- communicate inbuf around full ring of processors with messtag nbytes = size of inbuf = n datums * nper bytes callback() is invoked to allow caller to process/update each proc's inbuf if self=1 (default), then callback() is invoked on final iteration using original inbuf, which may have been updated for non-NULL outbuf, final updated inbuf is copied to it ok to specify outbuf = inbuf the ptr argument is a pointer to the instance of calling class ------------------------------------------------------------------------- */ void Comm::ring(int n, int nper, void *inbuf, int messtag, void (*callback)(int, char *, void *), void *outbuf, void *ptr, int self) { MPI_Request request; MPI_Status status; int nbytes = n*nper; int maxbytes; MPI_Allreduce(&nbytes,&maxbytes,1,MPI_INT,MPI_MAX,world); // no need to communicate without data if (maxbytes == 0) return; // sanity check if ((nbytes > 0) && inbuf == NULL) error->one(FLERR,"Cannot put data on ring from NULL pointer"); char *buf,*bufcopy; memory->create(buf,maxbytes,"comm:buf"); memory->create(bufcopy,maxbytes,"comm:bufcopy"); if (nbytes && inbuf) memcpy(buf,inbuf,nbytes); int next = me + 1; int prev = me - 1; if (next == nprocs) next = 0; if (prev < 0) prev = nprocs - 1; for (int loop = 0; loop < nprocs; loop++) { if (me != next) { MPI_Irecv(bufcopy,maxbytes,MPI_CHAR,prev,messtag,world,&request); MPI_Send(buf,nbytes,MPI_CHAR,next,messtag,world); MPI_Wait(&request,&status); MPI_Get_count(&status,MPI_CHAR,&nbytes); if (nbytes) memcpy(buf,bufcopy,nbytes); } if (self || loop < nprocs-1) callback(nbytes/nper,buf,ptr); } if (nbytes && outbuf) memcpy(outbuf,buf,nbytes); memory->destroy(buf); memory->destroy(bufcopy); } /* ---------------------------------------------------------------------- proc 0 reads Nlines from file into buf and bcasts buf to all procs caller allocates buf to max size needed each line is terminated by newline, even if last line in file is not return 0 if successful, 1 if get EOF error before read is complete ------------------------------------------------------------------------- */ int Comm::read_lines_from_file(FILE *fp, int nlines, int maxline, char *buf) { int m; if (me == 0) { m = 0; for (int i = 0; i < nlines; i++) { if (!fgets(&buf[m],maxline,fp)) { m = 0; break; } m += strlen(&buf[m]); } if (m) { if (buf[m-1] != '\n') strcpy(&buf[m++],"\n"); m++; } } MPI_Bcast(&m,1,MPI_INT,0,world); if (m == 0) return 1; MPI_Bcast(buf,m,MPI_CHAR,0,world); return 0; } /* ---------------------------------------------------------------------- proc 0 reads Nlines from file into buf and bcasts buf to all procs caller allocates buf to max size needed each line is terminated by newline, even if last line in file is not return 0 if successful, 1 if get EOF error before read is complete ------------------------------------------------------------------------- */ int Comm::read_lines_from_file_universe(FILE *fp, int nlines, int maxline, char *buf) { int m; int me_universe = universe->me; MPI_Comm uworld = universe->uworld; if (me_universe == 0) { m = 0; for (int i = 0; i < nlines; i++) { if (!fgets(&buf[m],maxline,fp)) { m = 0; break; } m += strlen(&buf[m]); } if (m) { if (buf[m-1] != '\n') strcpy(&buf[m++],"\n"); m++; } } MPI_Bcast(&m,1,MPI_INT,0,uworld); if (m == 0) return 1; MPI_Bcast(buf,m,MPI_CHAR,0,uworld); return 0; }